PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON88908.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 215aa MW: 24680.9 Da PI: 10.3778

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON88908.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	63	6.1e-20	28	75	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+++++++G ++WktIa+ g++R++k+c++rw++yl PON88908.1 28 KGAWTEEEDRKLAEVIALHGAKRWKTIAAIAGLNRCGKSCRLRWLNYL 75 79********************************************97 PP
2	Myb_DNA-binding	50.6	4.4e-16	81	126	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l PON88908.1 81 RGNISDQEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 126 78999***************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence
MGPLRDQSSL KPMEGKNNTV STKKEVNKGA WTEEEDRKLA EVIALHGAKR WKTIAAIAGL 60 NRCGKSCRLR WLNYLRPNIK RGNISDQEED LILRLHKLLG NRWSLIAGRL PGRTDNEIKN 120 YWNSHLSKKI KPKEKQIKGA TSSSRRQGSK INYQTKIHER DQTKEENNSL IFNNKGISNY 180 ENSNTSTAHL DVDDFFDFSN EGSLNLEWIS KFIQA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	8e-52	MYB family protein