PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON88936.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 252aa MW: 28695.1 Da PI: 8.8739

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON88936.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.2	6.8e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 r +WT+ Ed++l+++v+ +G g+W+ +++ g++R++k+c++rw++yl PON88936.1 14 RRAWTAMEDKILAEYVNIHGQGQWRYLPQKAGLKRCGKSCRLRWLNYL 61 679*******************************************97 PP
2	Myb_DNA-binding	51.3	2.6e-16	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++ eE++ +++++k+lG++ W+ Ia +++ gRt++++k++w++ PON88936.1 67 RGNFSLEEEDVIIKLHKLLGNR-WAFIAGYLP-GRTDNEIKNHWHT 110 89******************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence
MDRCTRHSKG GLSRRAWTAM EDKILAEYVN IHGQGQWRYL PQKAGLKRCG KSCRLRWLNY 60 LRPGIKRGNF SLEEEDVIIK LHKLLGNRWA FIAGYLPGRT DNEIKNHWHT KLSKLKTKPS 120 SSAPGESNKS PKPSSTNKSS EEQNLTKKQH QICEPQTQLA ITLPHPTEAQ GIKLNDQVGR 180 DEPVAPGPSN STAHDQFGSD TYLSPLLSLD ESQLSDSYWM DFDHIDQSFL SDFWTRNLFS 240 PSFENGGEKN WD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35550.1	7e-49	MYB family protein