PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON89042.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family GRAS
Protein Properties Length: 592aa    MW: 64208.5 Da    PI: 4.8017
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON89042.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS452.72.3e-1382235861374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 lv++L++cAeav++++l+la+al++++  la++++ +m+++a+yf+eALa+r+++    +y    ps+  +++ ++ l  +  f+e++P+lkf+h+taN
  PON89042.1 223 LVHTLMACAEAVQQDKLKLADALVKHIGILAASQAGAMRKVATYFAEALARRIYG----IY----PSDCLDSSYTDML--QMHFYETCPYLKFAHFTAN 311
                 689****************************************************....44....3433333344444..446**************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 qaIlea+++++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++++++l+++g++La++Ae++gv+fef+ +va++l+dle+ +++++p
  PON89042.1 312 QAILEAFATSSRVHVIDFGLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLAETIGVEFEFRGFVANSLADLEPAMFDLRP 410
                 **************************************************************************************************9 PP

        GRAS 199 ..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.eerikvErellgrei 294
                    E++aVn+v++lhrll++++++e+    vL  +  ++Pk+v+vveqea+hns+ Fl+rf+e+l+yys+lfdsle + +++  +++ ++++++lgr+i
  PON89042.1 411 aeIETVAVNSVFELHRLLARPGAVEK----VLGSIIAMRPKIVTVVEQEANHNSPVFLDRFTESLHYYSTLFDSLEGSSSSAPpSQDLVMSEVYLGRQI 505
                 8899**********************....*********************************************7775555469************** PP

        GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +nvvaceg +r+erhetl +Wr+r+++aGF pv+l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaW+
  PON89042.1 506 CNVVACEGPDRVERHETLDRWRKRFGSAGFDPVHLGSNAFKQASMLLALFAgGDGYRVEENNGCLTLGWHTRPLIATSAWQ 586
                 ********************************************************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    
MKMKMKRDHP DNFGGAGAPG YGGTNGGASN LKGECSSPLL SNGKAKIWEE EQEAGGMDEL  60
LAVLGYRVRS SDMADVAQKL EQLEMVLGSA QEDGISQLSD TVHYNPSDLS GWVRSMLSEL  120
NTPPPNIDPQ IDGPYLAPAE ESAIAAVDFS TDDSEYDLRA IPGVAAYPPQ NETQSENNPN  180
KRLKTSIGSS SLSSLSPPAP ATEMAESTRA VVVVDSQEAG VRLVHTLMAC AEAVQQDKLK  240
LADALVKHIG ILAASQAGAM RKVATYFAEA LARRIYGIYP SDCLDSSYTD MLQMHFYETC  300
PYLKFAHFTA NQAILEAFAT SSRVHVIDFG LKQGMQWPAL MQALALRPGG PPAFRLTGIG  360
PPQPDNTDAL QQVGWKLAQL AETIGVEFEF RGFVANSLAD LEPAMFDLRP AEIETVAVNS  420
VFELHRLLAR PGAVEKVLGS IIAMRPKIVT VVEQEANHNS PVFLDRFTES LHYYSTLFDS  480
LEGSSSSAPP SQDLVMSEVY LGRQICNVVA CEGPDRVERH ETLDRWRKRF GSAGFDPVHL  540
GSNAFKQASM LLALFAGGDG YRVEENNGCL TLGWHTRPLI ATSAWQLAAN PR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein