PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON89179.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 345aa MW: 38885.3 Da PI: 6.3507

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON89179.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.5	1.7e-14	21	68	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l ++ G g+W+ +ar g+ R++k+c++rw +yl PON89179.1 21 KGLWSPEEDDKLMNYMLNNGQGCWSDVARNAGLQRCGKSCRLRWINYL 68 678*******************************************97 PP
2	Myb_DNA-binding	52.2	1.4e-16	74	117	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+el+++++ +lG++ W+ Ia++++ gRt++++k++w++ PON89179.1 74 RGAFSPQEEELIIHLHSLLGNR-WSQIAARLP-GRTDNEIKNFWNS 117 89******************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MRKPEPSGNK NNNSSNNKLR KGLWSPEEDD KLMNYMLNNG QGCWSDVARN AGLQRCGKSC 60 RLRWINYLRP DLKRGAFSPQ EEELIIHLHS LLGNRWSQIA ARLPGRTDNE IKNFWNSTVK 120 KRLKNLSSSS TTSPNTSDSS FELKDTVEAR LNIPRRQENG MFSTSNYLQD SSPTSIQSNA 180 LNHMIRPFPA MLDHSGLNNM FGSNGFLNPS PSSCNMTQMG NNMVGDHGLF GEVTAVLGAN 240 IGIEGELFVP PLESVSTEEI SYKTDQRALL HDRFNMQSNN NMSYLMSNNL NSHNINNTSM 300 KAENGDHHHG VENYFQAELT VGEWDLEDLM KDVSSSFPFL DFQLE

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MRKPEPSGNK NNNSSNNKLR KGLWSPEEDD KLMNYMLNNG QGCWSDVARN AGLQRCGKSC  60
RLRWINYLRP DLKRGAFSPQ EEELIIHLHS LLGNRWSQIA ARLPGRTDNE IKNFWNSTVK  120
KRLKNLSSSS TTSPNTSDSS FELKDTVEAR LNIPRRQENG MFSTSNYLQD SSPTSIQSNA  180
LNHMIRPFPA MLDHSGLNNM FGSNGFLNPS PSSCNMTQMG NNMVGDHGLF GEVTAVLGAN  240
IGIEGELFVP PLESVSTEEI SYKTDQRALL HDRFNMQSNN NMSYLMSNNL NSHNINNTSM  300
KAENGDHHHG VENYFQAELT VGEWDLEDLM KDVSSSFPFL DFQLE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12870.1	3e-63	MYB family protein