PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON89215.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

Trihelix

Protein Properties

Length: 454aa MW: 51498.4 Da PI: 5.9433

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON89215.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	68.9	9.7e-22	122	218	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +Wt++ v++Li+++ ++++ + +kk++W+ vsk m ++g+++sp+qC++k+++lnkryk+++++ +++ +++++++ ++ d++ PON89215.1 122 KWTDNVVKLLIAVVACVGDDGMIAGgegpkrksgilQKKGKWKTVSKIMISKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGtSCRVVENPALMDSM 218 7************999998865334667778888********************************************669999999888887 PP

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence
MDSSGLGGGF LSGPNGGLLD LESSIHRHPT SQLGHSSIPN QHHMNMMSGV DSEHHPITLM 60 ELKGSTPKGV SVFGKGKAVA PITGNHGYNM SEEDEPSYME DGSGENYDGA KGKKGSPWQR 120 MKWTDNVVKL LIAVVACVGD DGMIAGGEGP KRKSGILQKK GKWKTVSKIM ISKGCHVSPQ 180 QCEDKFNDLN KRYKRLNDIL GRGTSCRVVE NPALMDSMPH LSAKAKDDVR KILSSKHLFY 240 KEMCAYHNGQ RIPDCHDIDL QGYSLPLGRC SKDNNASEEE EEEAGENHDS DDDELDNEDD 300 NNDDNDGERM GEFGDRRKVS DEDCHFWTSP QESFEGEMAG YFQDPTKSLW ERREWLKKQT 360 LHFQEQRVNI QAQALELEKQ RFRWLRYCSK KDRELERLRL ENERMILENE RKVLLLRQKE 420 LEIDLRRSEA SLEHSSLGVD RVQGRDQIDL GRHS

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence

MDSSGLGGGF LSGPNGGLLD LESSIHRHPT SQLGHSSIPN QHHMNMMSGV DSEHHPITLM  60
ELKGSTPKGV SVFGKGKAVA PITGNHGYNM SEEDEPSYME DGSGENYDGA KGKKGSPWQR  120
MKWTDNVVKL LIAVVACVGD DGMIAGGEGP KRKSGILQKK GKWKTVSKIM ISKGCHVSPQ  180
QCEDKFNDLN KRYKRLNDIL GRGTSCRVVE NPALMDSMPH LSAKAKDDVR KILSSKHLFY  240
KEMCAYHNGQ RIPDCHDIDL QGYSLPLGRC SKDNNASEEE EEEAGENHDS DDDELDNEDD  300
NNDDNDGERM GEFGDRRKVS DEDCHFWTSP QESFEGEMAG YFQDPTKSLW ERREWLKKQT  360
LHFQEQRVNI QAQALELEKQ RFRWLRYCSK KDRELERLRL ENERMILENE RKVLLLRQKE  420
LEIDLRRSEA SLEHSSLGVD RVQGRDQIDL GRHS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	2e-74	Trihelix family protein