PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON89655.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family ARF
Protein Properties Length: 910aa    MW: 100669 Da    PI: 6.2666
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON89655.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.81e-23132233199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l
  PON89655.1 132 FCKTLTASDTSTHGGFSVPRRAAEKVfppldytQQPPAQ--ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQL 226
                 99*****************************96555555..8************************************************..8899999 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +++++r+
  PON89655.1 227 LLGIRRA 233
                 ****997 PP
2Auxin_resp121.65.7e-40258341183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  PON89655.1 258 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 341
                 79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 910 aa     Download sequence    
MRLSSSSSSS GFNHQTQEGE KKCLNSELWH ACAGPLVSLP PVGSRVVYFP QGHSEQVAAS  60
TNKEVDAHIP NYPNLPPQLI CQLHNVTMHA DVETDEVYAQ MTLQPLSPQE QKEVYLLPAE  120
LGTPSKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPP LDYTQQPPAQ ELIARDLHDN  180
EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVLFIW NEKNQLLLGI RRANRPQTVM  240
PSSVLSSDSM HIGLLAAAAH AAATNSRFTI FYNPRASPSE FVIPLAKYVK AVYHTRVSVG  300
MRFRMLFETE ESSVRRYMGT ITGISDLDPV RWPNSHWRSV KVGWDESTAG ERQPRVSLWE  360
IEPLTTFPMY PSPFPLRLKR PWPSGLPSFH ALKDGDMSIN SPLMWLQGGV GDQGLQSLNF  420
QGLGITPWMP PRLDASMTGL QPDVYQAMAA AALQEMRAVD PSKCSAQSLL PFQQSQNVSN  480
GPAALIQRQM LPQSQPQNTF LQSFQENQAP AQPQLLQQQL QRYHPYNDQR QQQQQHQQQQ  540
QQQQQLQPSQ QLHQLSVQQQ IPNVMSALSN FSSGTQSQSP SLQAIPSQCQ QPSFPDSVGN  600
PISSSDVSQI HSILGSLSQN GGSQLLNLSG SNSVISSSSL LAKVEPQIPS GAAQSVLPQV  660
EQLGTPQSNV SDLTTLPPFP GREYSAYQGA TDPQSNLLFG VNIDSSSLMM QNGMSNLRNI  720
SSENDSLNMP FGSSNYSSAA GTDFPLNSDM TTSSCVDESG FLQSENGDQV NPPTRTFVKV  780
HKSGSFGRSL DISKFSSYDE LRSELARMFG LEGQLEDPQR SGWQLVFVDR ENDVLLLGDD  840
PWQEFVNNVW YIKILSPLEV QQMGKEGLTP ASSVPNRKVS NGNNPCDDYV NRQDLRNSSN  900
GIPSMGNLDY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein