PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON90195.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 401aa MW: 43591.8 Da PI: 6.024

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON90195.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.1	3.7e-17	54	99	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v ++G ++W++Iar + gR++k+c++rw + PON90195.1 54 KGPWSPEEDAILSRLVSKFGARNWSLIARGIS-GRSGKSCRLRWCNQ 99 79****************************.*********985 PP
2	Myb_DNA-binding	58	2.2e-18	106	150	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r++++ eEd+++v a++ +G++ W++Iar ++ gRt++ +k++w++ PON90195.1 106 RKPFSDEEDQIIVAAHAIHGNK-WAAIARLLP-GRTDNAIKNHWNST 150 789*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence
METNDNNNEA TTFATEFDAD ELAALGGSGD EATAAGEDGG VGGGGKKAGR DRVKGPWSPE 60 EDAILSRLVS KFGARNWSLI ARGISGRSGK SCRLRWCNQL DPAVKRKPFS DEEDQIIVAA 120 HAIHGNKWAA IARLLPGRTD NAIKNHWNST LRRRCMDREK VKLEPGHIVE DVSFDKTKAS 180 SEETMSCGDV NSFKSIEGRD LSGADHMVDH NEVLLPTEGY FSYEVQEPPT LFRPVARVSA 240 FSVYNHLDGQ QPLSSIRRPV PMQGPLVQAS KPDIEVFKLL EADYGGTSVP HQCGHGCCGM 300 QNGKSPQNSL LGPDFVDFSE PPAFPSFELA AIATDISNLA WLKSGLENSS VRAMGDAAGR 360 IIANGSQMKM GRFEEGRTGN HLLFEERRGN LMSMKTNVLS T

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence

METNDNNNEA TTFATEFDAD ELAALGGSGD EATAAGEDGG VGGGGKKAGR DRVKGPWSPE  60
EDAILSRLVS KFGARNWSLI ARGISGRSGK SCRLRWCNQL DPAVKRKPFS DEEDQIIVAA  120
HAIHGNKWAA IARLLPGRTD NAIKNHWNST LRRRCMDREK VKLEPGHIVE DVSFDKTKAS  180
SEETMSCGDV NSFKSIEGRD LSGADHMVDH NEVLLPTEGY FSYEVQEPPT LFRPVARVSA  240
FSVYNHLDGQ QPLSSIRRPV PMQGPLVQAS KPDIEVFKLL EADYGGTSVP HQCGHGCCGM  300
QNGKSPQNSL LGPDFVDFSE PPAFPSFELA AIATDISNLA WLKSGLENSS VRAMGDAAGR  360
IIANGSQMKM GRFEEGRTGN HLLFEERRGN LMSMKTNVLS T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	1e-107	MYB family protein