PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON90301.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

Trihelix

Protein Properties

Length: 411aa MW: 46524.6 Da PI: 5.3751

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON90301.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	90.6	1.7e-28	287	371	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++ ev+aLi++r+ me+++r +++k+ Wee+s m++ g++r++k+C+ekw+n+nk++kk +e+++kr s + +tc yf++l+ PON90301.1 287 RWPEAEVQALIALRNAMEHKFRLACSKGSTWEEISVSMHSLGYNRTAKKCREKWDNINKYFKKSRESANKR-SANGKTCLYFQNLD 371 8*******************************************************************9.66667****997 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MEVFAADRQI PNPDEFPQLI APFPEPTDDL IYAHPTAVIH PPDVINHHRP ISPPHKLRPI 60 RYHARSPVAD FPDHGTLGKG FLGHQPGEVD GELDCAVKLE AVEAPKISND VCNVSEMMNY 120 PIGFGSGMFL EGWEMNGEEH GVLENESGSS SDDGVDCTAA NLKGPMNRKR RKSTTNLEHF 180 LENLVMKVME KQEQMHNQLI EMIEKMEKER IMREEAWKQL EIERIKRDEL VRAQETSRSL 240 ALITFLQNML GEEIQIPEPV VREPCMEGNG VEIDTQTDTK CDPNSKRWPE AEVQALIALR 300 NAMEHKFRLA CSKGSTWEEI SVSMHSLGYN RTAKKCREKW DNINKYFKKS RESANKRSAN 360 GKTCLYFQNL DLLYKNGLAN TGIDGTFLSN GVTNNGVEAR SEKDSESLYS V

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MEVFAADRQI PNPDEFPQLI APFPEPTDDL IYAHPTAVIH PPDVINHHRP ISPPHKLRPI  60
RYHARSPVAD FPDHGTLGKG FLGHQPGEVD GELDCAVKLE AVEAPKISND VCNVSEMMNY  120
PIGFGSGMFL EGWEMNGEEH GVLENESGSS SDDGVDCTAA NLKGPMNRKR RKSTTNLEHF  180
LENLVMKVME KQEQMHNQLI EMIEKMEKER IMREEAWKQL EIERIKRDEL VRAQETSRSL  240
ALITFLQNML GEEIQIPEPV VREPCMEGNG VEIDTQTDTK CDPNSKRWPE AEVQALIALR  300
NAMEHKFRLA CSKGSTWEEI SVSMHSLGYN RTAKKCREKW DNINKYFKKS RESANKRSAN  360
GKTCLYFQNL DLLYKNGLAN TGIDGTFLSN GVTNNGVEAR SEKDSESLYS V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47660.1	7e-44	Trihelix family protein