PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON90476.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

WOX

Protein Properties

Length: 226aa MW: 25453.7 Da PI: 5.1916

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON90476.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.4	1.6e-20	85	145	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t+ ql++Le+ Fe+ n +ps+++++e+ ++l +++e++V++WFqNrRa+ k+ PON90476.1 85 RQRWSPTPLQLQILERIFEEgNGTPSKQKIKEIISELsqhgQISETNVYNWFQNRRARSKR 145 89***************99********99999999****************97 PP
2	Wus_type_Homeobox	98	7.6e-32	84	147	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RW+Ptp Q++iLe+++++G tP+k++i++i +eL+++G+i+++NV++WFQNr+aR+++kq PON90476.1 84 ARQRWSPTPLQLQILERIFEEGNGTPSKQKIKEIISELSQHGQISETNVYNWFQNRRARSKRKQ 147 789***********************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence
MEKENPQKEG VVGASAAAAG LYMKVMTDEQ MELLRRQISV YATICEKLAE MHKAISAQHD 60 LSGMKLGALH CDPLMAYAGH KITARQRWSP TPLQLQILER IFEEGNGTPS KQKIKEIISE 120 LSQHGQISET NVYNWFQNRR ARSKRKQSVP APNNMEPEVE AETEFRKDST KPEDTKFYDN 180 SAPRDHDVYF PSPEVDPDEL ISWSASGSVM ELQSVPSWGG FDVGEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	147	RRARSKRKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	4e-71	WOX family protein