PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON90563.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family LBD
Protein Properties Length: 206aa    MW: 22220.2 Da    PI: 8.2989
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON90563.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.33.7e-312103197
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C+++C+l +++     p++q++++ +v+k+FG++ ++++++a+p+++r+++++sl+yeA  r+ +Pv+Gavg++++++++++q+++e+
  PON90563.1   2 SCNGCRVLRKGCSDNCMLKECLqwiesPQAQAHATLFVAKFFGRAGLMSFISAVPQHQRPALFQSLLYEAVGRTVNPVNGAVGLLWTGNWHVCQSAVET 100
                 6***********************************************************************************************998 PP

      DUF260  95 all 97 
                 +l+
  PON90563.1 101 VLR 103
                 876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    
MSCNGCRVLR KGCSDNCMLK ECLQWIESPQ AQAHATLFVA KFFGRAGLMS FISAVPQHQR  60
PALFQSLLYE AVGRTVNPVN GAVGLLWTGN WHVCQSAVET VLRGGALGPL SEAADQTSAD  120
NAGSDIDHLV SRRSKKRPIT NFDDHGAFSP SDLDLCLMAG RRSSSSTKMV EKIRAATPSE  180
ESETTTLASS SVDSNGARSK LLRLFM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.12e-69LBD family protein