PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON90616.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

HB-PHD

Protein Properties

Length: 994aa MW: 110204 Da PI: 5.1143

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON90616.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	41.8	1.8e-13	828	872	12	56
HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ L + F++n+yp++++++ LA++lgLt +qV+ WF N R + PON90616.1 828 VQSLYKSFKENQYPDRARKQSLAEELGLTSQQVSKWFENMRWSSR 872 57899***********************************98776 PP
2	PHD	37.8	4.3e-13	445	500	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ ++++++lCdg C++ fH+ Cl+++l s ++p + wlC+ C++k PON90616.1 445 FCAKCGSkdLSADNDIILCDGaCDRGFHQFCLEPPLLSGDIPPDdeGWLCPGCDCK 500 699*977677****66**************999999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 994 aa Download sequence
MSERVTEIEP SEQIHHIESK TIENVQRELG QDVCTEPSEN RQAIAAAGSS GINEHLEAYD 60 GNVANYSLTK ELDLPKKDGS MSCQTEKNSC PQQVKSELKH EHGAGNQCTE PSGQKHHVDS 120 NLLQNEAGET NCKVFTFVVT EQCETITENR SLICDGKLAA PSEGVIRNCK TDKSACPQQS 180 TLGQTKDHDY GSVLGETPKT EDHPGSRLVQ NVPIETSNAA SDFIATERLE PALGDISKSP 240 FSKQPEQPED VKEKSSLEQV ETSSKSLRKN SSQLGRRDKR TSKSRKKKYM LRSSIGNDRV 300 LRSRTQEKPK SLESSNNLGG ASNGVEKKRK ERKKKREKRV IADEFLRMRK RLRYFLNRIQ 360 YEQNLIDAYS SEGWKGNSLE KLKPEKELQR ATSEIVRRKL KIRDLFQQLD ALCAEGRFPK 420 SVFDSEGQID SEDNTWYFAY VGQIFCAKCG SKDLSADNDI ILCDGACDRG FHQFCLEPPL 480 LSGDIPPDDE GWLCPGCDCK VDCVDLLNDS HGTKLSISDS WEKVFPEAAA AAREGQNQDH 540 NPEFPSDDSD DDDYDPDGPG TDEKVEGNES SSDESDYASA CDELEAPRND ERSLGLSSDD 600 SEDNDYDPRA LDIDENVEEE SLSSDFTSDS EDLAATLDDN KFSENDEVHM SSPLDAITPL 660 RKSDKQSFRR GENKSSLKGE LLDILDSGPG QDSSPPAYGK RHVERLDYKR LHDETYGNVP 720 SDSSDDEDWN GTAATRKRKK TTGQVAPELP NGTASTDKNE ATTEAINHNL ENNEPISRRR 780 TRQKSVAKDT NNSPSKCLEG SPKSGSTGSR VKSSYRRLGE AVTQNLFVQS LYKSFKENQY 840 PDRARKQSLA EELGLTSQQV SKWFENMRWS SRHSSCKEAG MSESVSNGSV PSPQTNKKQL 900 ESEKPMNIRN STCNGSQNEQ VPGIADALPE SCSKNLGDGK TKVLTNESNG QNSAAHSSGR 960 KRGRPRLQRP ETPALVNACE TGGSKKRGRQ KSAP

Sequence ? help Back to Top

Protein Sequence Length: 994 aa Download sequence

MSERVTEIEP SEQIHHIESK TIENVQRELG QDVCTEPSEN RQAIAAAGSS GINEHLEAYD  60
GNVANYSLTK ELDLPKKDGS MSCQTEKNSC PQQVKSELKH EHGAGNQCTE PSGQKHHVDS  120
NLLQNEAGET NCKVFTFVVT EQCETITENR SLICDGKLAA PSEGVIRNCK TDKSACPQQS  180
TLGQTKDHDY GSVLGETPKT EDHPGSRLVQ NVPIETSNAA SDFIATERLE PALGDISKSP  240
FSKQPEQPED VKEKSSLEQV ETSSKSLRKN SSQLGRRDKR TSKSRKKKYM LRSSIGNDRV  300
LRSRTQEKPK SLESSNNLGG ASNGVEKKRK ERKKKREKRV IADEFLRMRK RLRYFLNRIQ  360
YEQNLIDAYS SEGWKGNSLE KLKPEKELQR ATSEIVRRKL KIRDLFQQLD ALCAEGRFPK  420
SVFDSEGQID SEDNTWYFAY VGQIFCAKCG SKDLSADNDI ILCDGACDRG FHQFCLEPPL  480
LSGDIPPDDE GWLCPGCDCK VDCVDLLNDS HGTKLSISDS WEKVFPEAAA AAREGQNQDH  540
NPEFPSDDSD DDDYDPDGPG TDEKVEGNES SSDESDYASA CDELEAPRND ERSLGLSSDD  600
SEDNDYDPRA LDIDENVEEE SLSSDFTSDS EDLAATLDDN KFSENDEVHM SSPLDAITPL  660
RKSDKQSFRR GENKSSLKGE LLDILDSGPG QDSSPPAYGK RHVERLDYKR LHDETYGNVP  720
SDSSDDEDWN GTAATRKRKK TTGQVAPELP NGTASTDKNE ATTEAINHNL ENNEPISRRR  780
TRQKSVAKDT NNSPSKCLEG SPKSGSTGSR VKSSYRRLGE AVTQNLFVQS LYKSFKENQY  840
PDRARKQSLA EELGLTSQQV SKWFENMRWS SRHSSCKEAG MSESVSNGSV PSPQTNKKQL  900
ESEKPMNIRN STCNGSQNEQ VPGIADALPE SCSKNLGDGK TKVLTNESNG QNSAAHSSGR  960
KRGRPRLQRP ETPALVNACE TGGSKKRGRQ KSAP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	328	335	KRKERKKK
2	329	337	RKERKKKRE
3	332	338	RKKKREK
4	332	339	RKKKREKR
5	736	740	RKRKK
6	779	785	RRTRQKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	2e-97	HB-PHD family protein