PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON90946.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C2H2

Protein Properties

Length: 357aa MW: 39490.7 Da PI: 5.913

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON90946.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.6	2.8e-07	151	171	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H PON90946.1 151 CEICGKGFKRDANLRMHMRAH 171 *******************99 PP
2	zf-C2H2	16.4	2.6e-05	240	263	1	23
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ C+ k+Fs +Lk+H+r++ PON90946.1 240 YSCNRCNkKRFSVLADLKSHMRNC 263 99********************98 PP
3	zf-C2H2	11.5	0.00092	271	287	5	21
TTTEEESSHHHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrHir 21 Cg++Fsrk+ L H+ PON90946.1 271 TCGTTFSRKDKLFGHMA 287 6**************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence
MTSYLGEASH PRAECSGDLT REDPFGGSDP RVHLANLFSA QMRMDTVQRF LSESVNASAP 60 LSVDQMAMVS SEIFSAIQLV IEDGTAILAL SQPPMIAAPD LPDPKPVADV KVESFDEESI 120 KIGGGEDEGV GDFEIVELDS VELLAEHVHL CEICGKGFKR DANLRMHMRA HGNQYKTPEA 180 LSKPERRNGA SAEPNRTGPV RFSCPHAGCN RNKAHKKFRP LKSAICAKNH FRRSHCPKMY 240 SCNRCNKKRF SVLADLKSHM RNCGEVRWRC TCGTTFSRKD KLFGHMALFE GHMPAVVEDG 300 EKGKPLGAID EDEDLDMDEL CFREDDELFE GLLDGFGRPV EGFSLQDVLG SPTGFRS

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence

MTSYLGEASH PRAECSGDLT REDPFGGSDP RVHLANLFSA QMRMDTVQRF LSESVNASAP  60
LSVDQMAMVS SEIFSAIQLV IEDGTAILAL SQPPMIAAPD LPDPKPVADV KVESFDEESI  120
KIGGGEDEGV GDFEIVELDS VELLAEHVHL CEICGKGFKR DANLRMHMRA HGNQYKTPEA  180
LSKPERRNGA SAEPNRTGPV RFSCPHAGCN RNKAHKKFRP LKSAICAKNH FRRSHCPKMY  240
SCNRCNKKRF SVLADLKSHM RNCGEVRWRC TCGTTFSRKD KLFGHMALFE GHMPAVVEDG  300
EKGKPLGAID EDEDLDMDEL CFREDDELFE GLLDGFGRPV EGFSLQDVLG SPTGFRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	2e-71	C2H2 family protein