PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON90999.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MIKC_MADS

Protein Properties

Length: 230aa MW: 26267.9 Da PI: 10.1287

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON90999.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	85.4	3.3e-27	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krie +nrqvt+skRr+g++KKA ELS+LCd +v+++i+sstgkl+ey PON90999.1 9 KRIEKATNRQVTYSKRRKGLFKKADELSILCDSKVSLLILSSTGKLHEYV 58 79***********************************************7 PP
2	K-box	82.4	1.1e-27	71	165	1	95
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 yq+++g +l++a++e++q++l+kLk+++++L+r++R++ Ge++++L++ eL L q++e +++ +R++K++++ +qi+++ kk k+++++n+aL PON90999.1 71 YQRTTGIDLWSAQYERMQENLKKLKEKNRSLRRQIRQRRGEGVDNLDFGELLALDQEMEAAVQLVRERKYKVMSNQIDTTNKKLKQAKQINRALL 165 78899999************************************************************************************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence
MARGKIQIKR IEKATNRQVT YSKRRKGLFK KADELSILCD SKVSLLILSS TGKLHEYVSP 60 STTTKQVIDQ YQRTTGIDLW SAQYERMQEN LKKLKEKNRS LRRQIRQRRG EGVDNLDFGE 120 LLALDQEMEA AVQLVRERKY KVMSNQIDTT NKKLKQAKQI NRALLTDGIK DDPDYGLVDA 180 GGDYDSVTGY SNGIPGVFAL RLQPNQPNLH NDAESVLTSC LSSNWRVEKF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	109	LKKLKEKNRSLRRQIRQRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54340.1	2e-76	MIKC_MADS family protein