PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON91098.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family LBD
Protein Properties Length: 196aa    MW: 21328.4 Da    PI: 8.0636
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON91098.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.11.6e-292103197
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C + Cvl+ ++     p++q +++ +++k+FG+s ++++++a+p+++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+++e+
  PON91098.1   2 SCNGCRVLRKGCGEACVLRSCLhwiesPEAQGNATLFLAKFFGRSDLMSFISAVPDHHRPALFQSLLFEACGRTVNPVNGAVGLLSSGNWHVCQAAVET 100
                 6***********************************************************************************************998 PP

      DUF260  95 all 97 
                 +l 
  PON91098.1 101 VLS 103
                 876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    
MSCNGCRVLR KGCGEACVLR SCLHWIESPE AQGNATLFLA KFFGRSDLMS FISAVPDHHR  60
PALFQSLLFE ACGRTVNPVN GAVGLLSSGN WHVCQAAVET VLSGGALRPI QGVLTPKLDE  120
SSAAAETSWP SHYFPSLPSI NDPKQQELYS GGRGSSFPII EKLRRDSISL SSEESVMPKS  180
FGIGDRKERK LLNLFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.15e-65LBD family protein