PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON91439.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 262aa MW: 29332.3 Da PI: 6.3933

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON91439.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.3	4.1e-14	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd++l + + G +W+ ++++ g++R++k+c++rw +yl PON91439.1 14 RGAWTVEEDKKLTNFILNNGIQCWRHVPKRAGLKRCGKSCRLRWINYL 61 89********************************************97 PP
2	Myb_DNA-binding	49.2	1.2e-15	67	109	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+ + eE++++++++ +lG++ W++Ia +++ gRt++++k++w+ PON91439.1 67 RGAISGEEEDQIIQLHSRLGNR-WSKIALHFP-GRTDNEIKNHWN 109 667788**************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence
MGRQPCCDKI GLNRGAWTVE EDKKLTNFIL NNGIQCWRHV PKRAGLKRCG KSCRLRWINY 60 LRPDVKRGAI SGEEEDQIIQ LHSRLGNRWS KIALHFPGRT DNEIKNHWNC KIKKKLRLNG 120 LAHDPKKNHD EGTDLNSTNS SEQQASKCSP KEVQNSTTTS NSGSKQSYIL QNENGNDMSC 180 GSSENGNIIR SGSDAASTIL QADDSSGNSS SSTTFSAGMV LEEEHRCNFS EEDFGNWMES 240 VEAFLSWDEC NNLEDVFNVG DD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	111	117	KIKKKLR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14340.1	9e-69	MYB family protein