PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON91559.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family MIKC_MADS
Protein Properties Length: 212aa    MW: 24779.2 Da    PI: 8.4638
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON91559.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF78.54.7e-25960151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE.-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviif.sstgklyeyss 51
                krien+ nr+vt+skRrngi+KKA E+SvLCda+v++ii  s +gk+y ++s
  PON91559.1  9 KRIENTNNRSVTYSKRRNGIIKKAREISVLCDAKVSLIICtSGSGKMYAFCS 60
                79**********************************99863779******96 PP
2K-box68.52.2e-2372169198
       K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                 y++ sg++l++ k+e+l++e++++kke+en+  e+Rhl+Ged+ sL++keL +Le+ Le++l ++R++++e++ +  ++     +e+++    L +k 
  PON91559.1  72 YHRLSGNKLWDPKHEQLSNEIERIKKENENMLIELRHLKGEDILSLNHKELISLEDLLENGLVNVRARQSEFVDTRRQNDEALVEENKRLISVLYQKE 169
                 788999******************************************************************99888888888877777777776665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    
MGRGKIEIKR IENTNNRSVT YSKRRNGIIK KAREISVLCD AKVSLIICTS GSGKMYAFCS  60
ESTSLSQMLE DYHRLSGNKL WDPKHEQLSN EIERIKKENE NMLIELRHLK GEDILSLNHK  120
ELISLEDLLE NGLVNVRARQ SEFVDTRRQN DEALVEENKR LISVLYQKEM ELHGSVRDHM  180
DNGYNPRIRD YNSQMTFAFR VQPMQPNLQE RI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.18e-70MIKC_MADS family protein