PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON91568.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C3H

Protein Properties

Length: 2222aa MW: 247318 Da PI: 7.9768

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON91568.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.4	3.8e-06	2092	2113	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C++f +tGtC+ G++Ck +H++ PON91568.1 2092 CSTFEATGTCPQGSKCKLHHPK 2113 *****************99985 PP

Sequence ? help Back to Top
Protein Sequence Length: 2222 aa Download sequence
MDLPNLLHHH HHQPRYVPLP NSSRPHHPDN PNLHNNPRFQ PQYHHHNHHV PQPQPTLPPP 60 PPKTPPFQPL PPPPPPPHSS SSSSSSAHHP PPPIRPYNPG QSQFAFGGNP NLNRPPFEDD 120 HLRSSHPHRD FVLSGNVSHR VPLDDGRPRH RLPQFEPEIR PEIWDQPRVL PEHQSERLQR 180 PLDFDCGSQK FQFDHKPVSP YKVLRHDSAG SSRFRGEYVD GFESKHRDEL LRGGDDENYS 240 RRGSFLSSPG TSLRDTGFAS NPSLSVKDLE LETDSYNGQY SSAYDNEVFR SSREDGVYDN 300 QRWLRDKKFP RDAHKSSFER GSTEISNGDD ENYSRRGSFL SSPGTSFRDM GFVSNPSLKV 360 RDLESETDSY NGRCGSTYDT EVFRGGRRDG LYDNQRRVRD RKFPRDAHNS SFERGSTEIT 420 NGDGAHMGSV KREYYGPDLG RYSSRGSRED NNEYNRTPRK QLQKKSALLR IQMVKPNHRN 480 AESEHLHYPG YHDNSNSSFF RRKDQYVYEE EREGSPIELD VSFKSNSLVA KAIMAPSSSF 540 DVTDADLTLR DMKIWEDSLS DKDCSNAELA KLSDSTANVD SSMYVGKKTS NHDDDTIPSE 600 ENGVKNMCDT TSQASVSVTN QSVEKSEVKR SPRDADLDKD CAKVAPDKVS LKIPKKKKVV 660 KKVIKRVLRP RSHKLSSQQK KKHGRLLTAD ASIPTPSESC ATDKVVADLS CCCPNEVDML 720 HERKKVEGSP VAIDSEEHGI DINSSLKCVD DIEKDGNSLN NCSGSSSRKD EGPENEECSV 780 QGLPPILNCN KDLVKSLNVS TLPDIAHVAY IEQSCQNGDS LLLDSGLKKE SLPFTLPPVG 840 KVDSDLLNLG KTKMHDNLMN TYRSDNCTLD IVNGTNLSKE ESRVCDVGTF DALSKLQCSI 900 QVTSLQEKDL KEEVSKAHLS AESSAPDGLS SVRETTMDVD SSHHDRTTFL GYNNECNFEE 960 DNVISSRCTI DRITKPPSTD GATEFAGNFA TISFPNNKIL FGGNEGDTPL TGRKRTFRNQ 1020 LDFLRTNDID LDAVDVSNPA TAVDTTLSLS FEDPNLLLHG NGSSDGFPDA NLIARDDVNS 1080 GFLVTPSPCK KRRKVVASHL AIPSPTISET DEKAADRSTS CAEAPLTSDG VLTELKTDCD 1140 RPTADTFCAA TNLMHSESGI TVLYENKLSE GSSVTVGAVK SFFNDENVKS EHQLDCCPNH 1200 EKSIFPTVES LCSKNDQQVE AFNIGSGEEM LGLPSSREQV IAQDETPQCM VPSDIQPLDI 1260 DRRFSFAGME SDNHLVKDGF PNLSNYLSLP DDHSGVSTTT SNDEAMELVP DKLTVMGSPQ 1320 SSFNVSNVHI SDAISVSQLS SETCREGGKL VEKSVDEAGS DVSAQKSFLQ CTDANVKSDC 1380 ATESDQAIEG KTVSLPSQDS RSVSHGLNIN SAECTGQKNQ LGHAIPRTFP SRSSFRFTTL 1440 KKKSTSIHAN PRTWHRNSAS SASPLPGSKP SSRTVPSQSQ LPERDENIHS TSYVRKGNSL 1500 VRKPSPAASS LPQGSPGFSP SVYRLKSPVL DESKRSGEPD YRVDSGNSPG LLRMGETKSS 1560 CDKPRTPLIR SGTKLPNCVT ISSGDCTSFP SAGPLLNGCC ETTSDPISSL TNNDTTKFVE 1620 DSLTSENQNG QPKSLDNQTE LNDGKLAYLN TKRIVYVKRK SNQLVATSNS TDLAAPNAHK 1680 MQASSFDGYY KRRKNQLIRT SLESHTRRPI MLDENLNPGV KMALKAISSI RLSKRRSQKA 1740 VAKTFKRSAN SLVWTLCSSQ SSENDSGSVT HQKVYPYLFP WKRTAYWRST LQNWNLISKC 1800 NSLAISGKLL LTRKRDTVYT RSINGFSLRK SKVLSVGGSS LKWSKSIDRH SKKANEEATL 1860 AVAAVERKKR EQKGATHISS GSKDRNHSSR ERIFRIGLFR YKMDPSRRTL QRISDDESSF 1920 SATNPDKDAK RSYIPRRLVI GHKEYIRIGN GNQLIRDPKK RTRLLASEKV RWSLHTARLR 1980 LARKRKYCQF FTRFGKCNKD NGRCPYIHDP SKIAVCTKFL NGLCSNANCK LTHKVIPERM 2040 PDCSYFLQGL CTNQSCPYRH VNVNPKATTC EGFLRGYCAD GNECQKKHSY VCSTFEATGT 2100 CPQGSKCKLH HPKNRIQDKK RKRSREVRNA RGRYFGSPDL RVFESKKPLF EKNFAQDYND 2160 IISDGNLSDF IAIDVSDDDF GEYNDAASEQ TTFCDSDTSD LQQEDLDELI KPIRLMDASM 2220 TS

Sequence ? help Back to Top

Protein Sequence Length: 2222 aa Download sequence

MDLPNLLHHH HHQPRYVPLP NSSRPHHPDN PNLHNNPRFQ PQYHHHNHHV PQPQPTLPPP  60
PPKTPPFQPL PPPPPPPHSS SSSSSSAHHP PPPIRPYNPG QSQFAFGGNP NLNRPPFEDD  120
HLRSSHPHRD FVLSGNVSHR VPLDDGRPRH RLPQFEPEIR PEIWDQPRVL PEHQSERLQR  180
PLDFDCGSQK FQFDHKPVSP YKVLRHDSAG SSRFRGEYVD GFESKHRDEL LRGGDDENYS  240
RRGSFLSSPG TSLRDTGFAS NPSLSVKDLE LETDSYNGQY SSAYDNEVFR SSREDGVYDN  300
QRWLRDKKFP RDAHKSSFER GSTEISNGDD ENYSRRGSFL SSPGTSFRDM GFVSNPSLKV  360
RDLESETDSY NGRCGSTYDT EVFRGGRRDG LYDNQRRVRD RKFPRDAHNS SFERGSTEIT  420
NGDGAHMGSV KREYYGPDLG RYSSRGSRED NNEYNRTPRK QLQKKSALLR IQMVKPNHRN  480
AESEHLHYPG YHDNSNSSFF RRKDQYVYEE EREGSPIELD VSFKSNSLVA KAIMAPSSSF  540
DVTDADLTLR DMKIWEDSLS DKDCSNAELA KLSDSTANVD SSMYVGKKTS NHDDDTIPSE  600
ENGVKNMCDT TSQASVSVTN QSVEKSEVKR SPRDADLDKD CAKVAPDKVS LKIPKKKKVV  660
KKVIKRVLRP RSHKLSSQQK KKHGRLLTAD ASIPTPSESC ATDKVVADLS CCCPNEVDML  720
HERKKVEGSP VAIDSEEHGI DINSSLKCVD DIEKDGNSLN NCSGSSSRKD EGPENEECSV  780
QGLPPILNCN KDLVKSLNVS TLPDIAHVAY IEQSCQNGDS LLLDSGLKKE SLPFTLPPVG  840
KVDSDLLNLG KTKMHDNLMN TYRSDNCTLD IVNGTNLSKE ESRVCDVGTF DALSKLQCSI  900
QVTSLQEKDL KEEVSKAHLS AESSAPDGLS SVRETTMDVD SSHHDRTTFL GYNNECNFEE  960
DNVISSRCTI DRITKPPSTD GATEFAGNFA TISFPNNKIL FGGNEGDTPL TGRKRTFRNQ  1020
LDFLRTNDID LDAVDVSNPA TAVDTTLSLS FEDPNLLLHG NGSSDGFPDA NLIARDDVNS  1080
GFLVTPSPCK KRRKVVASHL AIPSPTISET DEKAADRSTS CAEAPLTSDG VLTELKTDCD  1140
RPTADTFCAA TNLMHSESGI TVLYENKLSE GSSVTVGAVK SFFNDENVKS EHQLDCCPNH  1200
EKSIFPTVES LCSKNDQQVE AFNIGSGEEM LGLPSSREQV IAQDETPQCM VPSDIQPLDI  1260
DRRFSFAGME SDNHLVKDGF PNLSNYLSLP DDHSGVSTTT SNDEAMELVP DKLTVMGSPQ  1320
SSFNVSNVHI SDAISVSQLS SETCREGGKL VEKSVDEAGS DVSAQKSFLQ CTDANVKSDC  1380
ATESDQAIEG KTVSLPSQDS RSVSHGLNIN SAECTGQKNQ LGHAIPRTFP SRSSFRFTTL  1440
KKKSTSIHAN PRTWHRNSAS SASPLPGSKP SSRTVPSQSQ LPERDENIHS TSYVRKGNSL  1500
VRKPSPAASS LPQGSPGFSP SVYRLKSPVL DESKRSGEPD YRVDSGNSPG LLRMGETKSS  1560
CDKPRTPLIR SGTKLPNCVT ISSGDCTSFP SAGPLLNGCC ETTSDPISSL TNNDTTKFVE  1620
DSLTSENQNG QPKSLDNQTE LNDGKLAYLN TKRIVYVKRK SNQLVATSNS TDLAAPNAHK  1680
MQASSFDGYY KRRKNQLIRT SLESHTRRPI MLDENLNPGV KMALKAISSI RLSKRRSQKA  1740
VAKTFKRSAN SLVWTLCSSQ SSENDSGSVT HQKVYPYLFP WKRTAYWRST LQNWNLISKC  1800
NSLAISGKLL LTRKRDTVYT RSINGFSLRK SKVLSVGGSS LKWSKSIDRH SKKANEEATL  1860
AVAAVERKKR EQKGATHISS GSKDRNHSSR ERIFRIGLFR YKMDPSRRTL QRISDDESSF  1920
SATNPDKDAK RSYIPRRLVI GHKEYIRIGN GNQLIRDPKK RTRLLASEKV RWSLHTARLR  1980
LARKRKYCQF FTRFGKCNKD NGRCPYIHDP SKIAVCTKFL NGLCSNANCK LTHKVIPERM  2040
PDCSYFLQGL CTNQSCPYRH VNVNPKATTC EGFLRGYCAD GNECQKKHSY VCSTFEATGT  2100
CPQGSKCKLH HPKNRIQDKK RKRSREVRNA RGRYFGSPDL RVFESKKPLF EKNFAQDYND  2160
IISDGNLSDF IAIDVSDDDF GEYNDAASEQ TTFCDSDTSD LQQEDLDELI KPIRLMDASM  2220
TS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	655	682	KKKKVVKKVIKRVLRPRSHKLSSQQKKK
2	1090	1094	KKRRK
3	2119	2124	KKRKRS