PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON91625.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family MIKC_MADS
Protein Properties Length: 243aa    MW: 27456.8 Da    PI: 9.8587
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON91625.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.14e-27959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                k+i+n + rqvtfskRr g+ KKA+ELS+LCdaeva+iifs tgkl+e+ss
  PON91625.1  9 KKIDNVTARQVTFSKRRRGLVKKAQELSILCDAEVALIIFSATGKLFEFSS 59
                68***********************************************96 PP
2K-box35.63.9e-13911731799
       K-box  17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                  ++++ +L ke+ n   ++R+++G dL  L+l eL +L ++Le +l+++ ++K++ ++ +i  l +k  e+ +en++L++kl+
  PON91625.1  91 NNTNHMRLSKEVANKSLQLRQMMGVDLRGLKLDELLHLVKKLEAGLTRVLETKEKRFRIEIAALERKGAEMIKENQQLKQKLM 173
                 4556778999999888899**************************************************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MAREKIKIKK IDNVTARQVT FSKRRRGLVK KAQELSILCD AEVALIIFSA TGKLFEFSSS  60
SMKDLLARCE AQHNNHEKSD QLPSLELQLE NNTNHMRLSK EVANKSLQLR QMMGVDLRGL  120
KLDELLHLVK KLEAGLTRVL ETKEKRFRIE IAALERKGAE MIKENQQLKQ KLMMKLYSKG  180
KKPVVMGYSD KYVIDINNTV MEERMSSNDQ SAATNVCSCN SSNASLADDY SDTSLKLGLP  240
CSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.17e-75MIKC_MADS family protein