PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON91708.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family NF-YA
Protein Properties Length: 343aa    MW: 37691.9 Da    PI: 9.5345
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON91708.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.21.2e-32168224158
   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 +ep+YVNaKQy++Il+RRq+Rak+e ekkl +k rkpylheSRh hA+rR+RgsgGrF
  PON91708.1 168 EEPVYVNAKQYHGILRRRQSRAKAELEKKL-IKVRKPYLHESRHLHAMRRARGSGGRF 224
                 69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    
MHQKPNGTNH PESDANSARN LQSTVSNSQP WWGSKGVFVG TAMTLSPPTH LNGDLGNQTS  60
NSSSQAKQGG PEEGSHRHVS KELLQSDGKC GEEQQMQRVS AVTPPKMNDY LAQPTQLELA  120
SQSIACVSYP YSDPYFGGVM PYGPHALVQS HCLGMPSARM PLHLDMAEEP VYVNAKQYHG  180
ILRRRQSRAK AELEKKLIKV RKPYLHESRH LHAMRRARGS GGRFLNTKKT DGTAHNATPD  240
VNTTTSGAAT STDPIISLRT KPVSSDSSSG HHESTDTQEM YQNKAYRSSV NGNSCYLHHP  300
GFQLSAYHSL SGDHHRIEEG DLISGQHRNR IMTNGTHRAL SIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.22e-46NF-YA family protein