PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON92042.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 332aa MW: 37064.2 Da PI: 5.0465

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON92042.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.7	3.6e-15	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+lv+++k g+ +W++ ++ g+ R++k+c++rw +yl PON92042.1 14 KGPWTAEEDEILVNYIKNNNGHgSWRSLPKLAGLLRCGKSCRLRWTNYL 62 79*************998888******99**********97 PP
2	Myb_DNA-binding	52	1.7e-16	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++l+++++ +lG++ W++Ia+ ++ gRt++++k+ w+++l PON92042.1 68 RGPFTQEEEKLIIQLHGMLGNR-WAAIASQLP-GRTDNEIKNLWNTHL 113 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence
MGRTPCCDRK GLKKGPWTAE EDEILVNYIK NNNGHGSWRS LPKLAGLLRC GKSCRLRWTN 60 YLRPDIKRGP FTQEEEKLII QLHGMLGNRW AAIASQLPGR TDNEIKNLWN THLKKRLLCM 120 GLDPHTHEPF ASQPHYPSTN SSPASPATRH MAQWESARLE AEARLSRESS LFTSAQHCTK 180 SNDSSDYFLR LWNSEVGDSF RKLTTRDDKT ACCSPVSQAS ASALTTEAGL NRAAFDTMAG 240 DQAEDVDCKS FIKFSNTEEE GEEEEEEDHV LIGAGSDSSC SNDMEDSSDS SALQLLLDFP 300 INNDMSFLEE NCGGHYTTDP AMLSENSFIC RL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61250.1	1e-116	MYB family protein