PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON92165.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 395aa MW: 43584.5 Da PI: 7.3711

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON92165.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.5	4.7e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ +++q G+g +W + ++++g++R++k+c++rw++yl PON92165.1 14 KGPWSPEEDAKLKAYIEQNGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	36.5	1.1e-11	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ PON92165.1 69 GGFSEEEDNIICSLYLSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDAKLKAYIE QNGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDNIIC SLYLSIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK 120 QRKEQAAAAA ANQAAAARRA NNNNNNNNVI KPEIIKREAS STTTAFDHNI LLPGGFMMSH 180 QRVPYWPELP AVTAMPVVNN NNNNNHYYNV SDQLKDQEAA ASIKNFLIKL GGRFSETESG 240 TTSTTTTTST PDFQYPLDQS YQTAASFDHQ WPIMGQYEVE ASGVGPTSMD HGLEKLQAEL 300 SQLIYSNPAQ EILLDGSDHE GFYGSMEMVK VAGSSSTGSG TSTTTNSVDS GISSLVNINY 360 PSMVPDYGNY QQPHDHHHHQ DSAFGYVFKS NVINS

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence

MGRAPCCDKA NVKKGPWSPE EDAKLKAYIE QNGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIC SLYLSIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK  120
QRKEQAAAAA ANQAAAARRA NNNNNNNNVI KPEIIKREAS STTTAFDHNI LLPGGFMMSH  180
QRVPYWPELP AVTAMPVVNN NNNNNHYYNV SDQLKDQEAA ASIKNFLIKL GGRFSETESG  240
TTSTTTTTST PDFQYPLDQS YQTAASFDHQ WPIMGQYEVE ASGVGPTSMD HGLEKLQAEL  300
SQLIYSNPAQ EILLDGSDHE GFYGSMEMVK VAGSSSTGSG TSTTTNSVDS GISSLVNINY  360
PSMVPDYGNY QQPHDHHHHQ DSAFGYVFKS NVINS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	7e-81	MYB family protein