PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON92440.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family MYB_related
Protein Properties Length: 353aa    MW: 38266.1 Da    PI: 9.9568
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON92440.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.11e-13119164247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++WT+eE+  ++ + ++lG+g+W+ Ia    ++Rt+ q+ s+ qky
       PON92440.1 119 KPWTEEEHRTFLTGLNKLGKGDWRGIATQYVTTRTPSQVASHAQKY 164
                      58*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    
MVKEQARKCS HCGKNGHNSR TCNNINNNNV NMVHGNRING NSVDGGNVFK LFGVTIMEKG  60
GTDSMKKSLS MDNLAACGRG GAGHGNDVVP GVDHEAGYLS DGLIHNKRRK AAHERKRGKP  120
WTEEEHRTFL TGLNKLGKGD WRGIATQYVT TRTPSQVASH AQKYFLRQVP SNDKKKRRTS  180
LFDMTFEKED HLAPHPYAET SSKAGSPLVL AENNHATKLP SEVLNRFPHL CLDNYPALVP  240
STATSNYQLV PYGMGMPGNV QPWPVINLGG PSYLYSNILP QVYGKVESCD PVVGTHPSGI  300
PPPRSPPSSP SKAARGASSA DQREGLDLKI GQPQSKQSSE LSSPSSGPII RVT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174178KKKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.19e-53MYB_related family protein