PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON92771.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family HD-ZIP
Protein Properties Length: 194aa    MW: 22106.6 Da    PI: 6.6496
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON92771.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.8e-182073356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                k+ +++++q++ Le+ F  +++++ e++ +LA++lg++ rqV vW+qN+Ra+++
  PON92771.1 20 KKKRLNEDQVRLLERSFTFDKKLDPERKLQLADQLGIPPRQVAVWYQNKRARWR 73
                566799***********************************************9 PP
2HD-ZIP_I/II107.59.8e-3519111193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  +kk+rl+++qv+lLE+sF+ ++kL+perK +la +Lg+ prqvavW+qn+RAR++++ lE d++aL+ ++++  +e+++Le +ve Lreel++
   PON92771.1  19 NKKKRLNEDQVRLLERSFTFDKKLDPERKLQLADQLGIPPRQVAVWYQNKRARWRAQTLELDCSALQLKLETALAEKRQLEGDVEMLREELEK 111
                  59****************************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    
MDLFQTQSHK NSYYNSKHNK KKRLNEDQVR LLERSFTFDK KLDPERKLQL ADQLGIPPRQ  60
VAVWYQNKRA RWRAQTLELD CSALQLKLET ALAEKRQLEG DVEMLREELE KARQSLFAVG  120
VSVVDHQKAH PPATTVCSVS DGGSSSGSFG DQYVIDLDHD HGHGQGQGQG HGHGHDHDQV  180
LQMDHELFAS LIDW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.11e-31HD-ZIP family protein