PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON92842.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family MYB
Protein Properties Length: 302aa    MW: 34227.4 Da    PI: 8.4094
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON92842.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61.1e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed llv++++ +G g+W++ +++ g+ R++k+c++rw +yl
       PON92842.1 14 RGPWTPREDSLLVNYIQHYGEGHWRSLPKKAGLLRCGKSCRLRWMNYL 61
                     89******************************99************97 PP
2Myb_DNA-binding52.88.9e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T++Ed+l+++++ +lG++ W++Ia +++ gRt++++k++w+++l
       PON92842.1  67 RGNITPDEDDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 112
                      7999******************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    
MGRTPCCSQV GLRRGPWTPR EDSLLVNYIQ HYGEGHWRSL PKKAGLLRCG KSCRLRWMNY  60
LRPDIKRGNI TPDEDDLIIR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNS HLSKRLKNDT  120
TTTTTTTTTT TTVDKRHTNY HGRNPKGTSK SSEKSTKKPS TEKNNRDGAN CEQEVIAKTK  180
IYLPKPIRVG QFSSIKNDGF DAGSNSMPSF LDNVHGQDCT EVLNLDHVFK PGVDQGGNAG  240
GGDPLLCVKD HDFANNIIDR RCESISCHDF SQQKDDMLDK IYEEYQRLLE VEDLLQISDS  300
FC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-63MYB family protein