PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON92953.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family YABBY
Protein Properties Length: 130aa    MW: 14310.5 Da    PI: 7.2753
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON92953.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY88.71.5e-27121272116
       YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeen.lksnvekeesastsvsse 99 
                 d+   seq+Cyv+C+fC+t+lavsvP ++lf+++tvrCGhCt+ll vn+       a + hl++s+  + +++l  e  +      +++++++++ +  
  PON92953.1  12 DHLPPSEQLCYVHCKFCDTVLAVSVPCSTLFQTLTVRCGHCTNLLPVNMCGLLLPSANQFHLGHSFFSPSHHNLLEEIPKpAPNFLMNHQASMADFALP 110
                 57789*******************************************999999999999*****9888666665554430344444445555555555 PP

       YABBY 100 klsenedeevprvppvi 116
                      +++e++r+p ++
  PON92953.1 111 PRGVPHHDELSRPPVIN 127
                 55666666666655555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    
MSSSSASTLS LDHLPPSEQL CYVHCKFCDT VLAVSVPCST LFQTLTVRCG HCTNLLPVNM  60
CGLLLPSANQ FHLGHSFFSP SHHNLLEEIP KPAPNFLMNH QASMADFALP PRGVPHHDEL  120
SRPPVINRRT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00180.12e-27YABBY family protein