PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON93048.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

Trihelix

Protein Properties

Length: 744aa MW: 81735.2 Da PI: 5.1882

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON93048.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	97.1	1.6e-30	80	164	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m+ ++r++ lk+plWe+vs+k++e g++rs k+Ckek+en++k+yk++keg+ +r ++ +t+++f++lea PON93048.1 80 RWPRQETLALLKIRSDMDAAFRDATLKGPLWEHVSRKLAELGYHRSGKKCKEKFENVHKYYKRTKEGRAGR--QDGKTYKFFTELEA 164 8******************************************************************98..56667****985 PP
2	trihelix	106	2.6e-33	471	556	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k evlaLi++r+ +e++++++ k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf++l+a PON93048.1 471 RWPKAEVLALIKLRSGLETKYQEAGPKGPLWEEISAEMQRMGYRRSAKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFNELDA 556 8*******************************************************************8.99999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 744 aa Download sequence
MQRGQEEGGV SSTDDMSTGG GGGGDELTEQ AGQQLPVEEA SPISSRPPAA SVSLDHEFMS 60 LSSAGAGAGA GGSGGGGGNR WPRQETLALL KIRSDMDAAF RDATLKGPLW EHVSRKLAEL 120 GYHRSGKKCK EKFENVHKYY KRTKEGRAGR QDGKTYKFFT ELEALHGTAA NQNQPQPHQL 180 PPPPLVSAVS IGISNPMPIS SFRASPNIHS ATTSHLPPPY STTATPAPAP APAPPSFSSN 240 SSSSSPGSED DDDDNDLEGG EPSNAAGSSR KRKRDWSSSS TMMEFFENLM KQVMHKQEAM 300 QQRFLEVIEK REQDRMIREE AWKRQEMARL TREHQLMSQE RAMSASRDAA IVSFLQKITG 360 QTIQLPDPPP PPPPINNNNN YIHSVVNVPS AAPPPPAVSP PAPAPAPSVA AAPVIAQQHD 420 DQLVVQSADW YHQHQPVSAG QQQQQQQQQV AAQQQEHTHT FTGGASSSSS RWPKAEVLAL 480 IKLRSGLETK YQEAGPKGPL WEEISAEMQR MGYRRSAKRC KEKWENINKY FKKVKESNKK 540 RPEDAKTCPY FNELDALYRK KILGSGGSYN QMNRAEQQQQ EHNISGTVEP PQESRSDMQS 600 ITAVRAEQVQ PPATNIEAEN KIAGAETSNF GEAAKKPEDI VMELMEVDEQ DRCGGTQAGL 660 VVPQQQQTLL VNDYDRIEEL VDSHDDDEED EDEEEDTDDE DQLQVERKMA NYKIQLQRQT 720 SSTGPSKNGA GNETTPSSFL AMVQ

Sequence ? help Back to Top

Protein Sequence Length: 744 aa Download sequence

MQRGQEEGGV SSTDDMSTGG GGGGDELTEQ AGQQLPVEEA SPISSRPPAA SVSLDHEFMS  60
LSSAGAGAGA GGSGGGGGNR WPRQETLALL KIRSDMDAAF RDATLKGPLW EHVSRKLAEL  120
GYHRSGKKCK EKFENVHKYY KRTKEGRAGR QDGKTYKFFT ELEALHGTAA NQNQPQPHQL  180
PPPPLVSAVS IGISNPMPIS SFRASPNIHS ATTSHLPPPY STTATPAPAP APAPPSFSSN  240
SSSSSPGSED DDDDNDLEGG EPSNAAGSSR KRKRDWSSSS TMMEFFENLM KQVMHKQEAM  300
QQRFLEVIEK REQDRMIREE AWKRQEMARL TREHQLMSQE RAMSASRDAA IVSFLQKITG  360
QTIQLPDPPP PPPPINNNNN YIHSVVNVPS AAPPPPAVSP PAPAPAPSVA AAPVIAQQHD  420
DQLVVQSADW YHQHQPVSAG QQQQQQQQQV AAQQQEHTHT FTGGASSSSS RWPKAEVLAL  480
IKLRSGLETK YQEAGPKGPL WEEISAEMQR MGYRRSAKRC KEKWENINKY FKKVKESNKK  540
RPEDAKTCPY FNELDALYRK KILGSGGSYN QMNRAEQQQQ EHNISGTVEP PQESRSDMQS  600
ITAVRAEQVQ PPATNIEAEN KIAGAETSNF GEAAKKPEDI VMELMEVDEQ DRCGGTQAGL  660
VVPQQQQTLL VNDYDRIEEL VDSHDDDEED EDEEEDTDDE DQLQVERKMA NYKIQLQRQT  720
SSTGPSKNGA GNETTPSSFL AMVQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	6e-48	Trihelix family protein