PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON93123.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 382aa MW: 42788.9 Da PI: 7.1579

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON93123.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.9	1.1e-18	41	88	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd+ l+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl PON93123.1 41 RGPWTVEEDLTLINYIANHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 88 89********************************************97 PP
2	Myb_DNA-binding	50.9	3.5e-16	94	137	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ PON93123.1 94 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 137 7999****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
MDSINNIVKS GGRSSISGNS SSSNSSVQSD QESEMISDLR RGPWTVEEDL TLINYIANHG 60 EGRWNSLARC AGLKRTGKSC RLRWLNYLRP DVRRGNITLE EQLLILELHS RWGNRWSKIA 120 QHLPGRTDNE IKNYWRTRVQ KHAKQLKCDV NSKQFKDTMR YLWMPRLVER IQAAAASSSS 180 TATATATHHQ LNNMASSNYN NNFNQLSPAP VIMPMNNSTT TFNDQFGGAA SATTYTPENS 240 SSDSFGAQVS PVSELTAENY YSTSTINPNP PPPPPPPPTH GQYSYHQVGY NNYYVPATDH 300 QSIMRTTTTT STTSATPSSA GYDHNNLSSS STTTTDHQLG FQSMEQNSSN YFNNWNLDQG 360 MDSLWDVEDI WLLQQHLNNG NF

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

MDSINNIVKS GGRSSISGNS SSSNSSVQSD QESEMISDLR RGPWTVEEDL TLINYIANHG  60
EGRWNSLARC AGLKRTGKSC RLRWLNYLRP DVRRGNITLE EQLLILELHS RWGNRWSKIA  120
QHLPGRTDNE IKNYWRTRVQ KHAKQLKCDV NSKQFKDTMR YLWMPRLVER IQAAAASSSS  180
TATATATHHQ LNNMASSNYN NNFNQLSPAP VIMPMNNSTT TFNDQFGGAA SATTYTPENS  240
SSDSFGAQVS PVSELTAENY YSTSTINPNP PPPPPPPPTH GQYSYHQVGY NNYYVPATDH  300
QSIMRTTTTT STTSATPSSA GYDHNNLSSS STTTTDHQLG FQSMEQNSSN YFNNWNLDQG  360
MDSLWDVEDI WLLQQHLNNG NF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49620.1	9e-85	MYB family protein