PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON93280.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

CO-like

Protein Properties

Length: 429aa MW: 46704.1 Da PI: 5.6641

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON93280.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	17.3	9.6e-06	46	87	4	41
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedCllee..Hkg..Htvvp 41 C++++ ++++ C d ++ +C +C ++ ++ H+++p PON93280.1 46 LLCDKCNGQPAIVRCVDEKMSMCLNCDWSGssCSStgHRRQP 87 68************************9888776446677665 PP
2	CCT	62.7	1.1e-21	373	416	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RY+eK+ktR F K+irY+sRKa+A++R+RvKGrFvk+ PON93280.1 373 RDKAKMRYNEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKAG 416 899**************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence
MEPLCEFCGV VRAVVYCKSD FASLCLHCDA RVHSANLLSR RHQRSLLCDK CNGQPAIVRC 60 VDEKMSMCLN CDWSGSSCSS TGHRRQPLYF YTGCPSLAEF LNIFNSVLNA PSSGGFDGDW 120 GTSLGTITVN EDCISNGTLE PAKEAGQFGM VADSDDQSHP KLEPWTGSSS IVTPNPNCVP 180 YFQDQPAAFF PEESILSRGC SKLKDLRIHD GNDLFKSLNI DKVPMNFGNG NEIFNCSQGS 240 TTYPFEDGGM DCLLMEKNLS VTESSGPTES AIEASSSGQQ DYMGFQPPHL GGSANVMQAM 300 NGGSNCALVN PTSSRNTNLG FPAGQVHSGI SLSLSNITGE SSAADYQDCG MSPAFLTGES 360 WDSSLEASCP QARDKAKMRY NEKKKTRTFG KQIRYASRKA RADTRKRVKG RFVKAGEEYD 420 YDPQVTRDF

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence

MEPLCEFCGV VRAVVYCKSD FASLCLHCDA RVHSANLLSR RHQRSLLCDK CNGQPAIVRC  60
VDEKMSMCLN CDWSGSSCSS TGHRRQPLYF YTGCPSLAEF LNIFNSVLNA PSSGGFDGDW  120
GTSLGTITVN EDCISNGTLE PAKEAGQFGM VADSDDQSHP KLEPWTGSSS IVTPNPNCVP  180
YFQDQPAAFF PEESILSRGC SKLKDLRIHD GNDLFKSLNI DKVPMNFGNG NEIFNCSQGS  240
TTYPFEDGGM DCLLMEKNLS VTESSGPTES AIEASSSGQQ DYMGFQPPHL GGSANVMQAM  300
NGGSNCALVN PTSSRNTNLG FPAGQVHSGI SLSLSNITGE SSAADYQDCG MSPAFLTGES  360
WDSSLEASCP QARDKAKMRY NEKKKTRTFG KQIRYASRKA RADTRKRVKG RFVKAGEEYD  420
YDPQVTRDF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21880.1	3e-96	CO-like family protein