PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON93290.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 361aa MW: 40425.5 Da PI: 6.2668

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON93290.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.3	2.6e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEd + +++v ++G g W++++++ g++R++k+c++rw ++l PON93290.1 14 RGLWSAEEDARMLEYVSKHGEGKWTSVPKRAGLRRCGKSCRLRWTNHL 61 788******************************************996 PP
2	Myb_DNA-binding	46.5	8.3e-15	69	110	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T+ E++l+v++++ G++ W+ Ia+ ++ gRt++++k++w++ PON93290.1 69 SFTPKEEQLIVKLHAAIGSR-WSMIAQQLP-GRTDNDVKNYWNT 110 79****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MVRPPYCDKP NLKRGLWSAE EDARMLEYVS KHGEGKWTSV PKRAGLRRCG KSCRLRWTNH 60 LRPDLKHESF TPKEEQLIVK LHAAIGSRWS MIAQQLPGRT DNDVKNYWNT KLRKKLTEMG 120 IDPVTHKPFS QILADYGNVG GLPKSGMRIG SLNKDLKNAI LMKTEPKGFP NTSRHFVPLP 180 SPTITMNISP KTEPTQESFL SNDNNILSND KSLNLLSQLQ AIKLVTEASN YKQNYESSLP 240 SFYPEATFSS SSSSSSSCSS GAQEMSPLAF NWNDFILEDA FPPNEAQEQQ NNMAEFISSQ 300 NLIIPDSQIQ SEGATNMDNN TSISSNGAIS ETCESSFVEA LLARENEMLL EFPDLMAEAF 360 Y

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MVRPPYCDKP NLKRGLWSAE EDARMLEYVS KHGEGKWTSV PKRAGLRRCG KSCRLRWTNH  60
LRPDLKHESF TPKEEQLIVK LHAAIGSRWS MIAQQLPGRT DNDVKNYWNT KLRKKLTEMG  120
IDPVTHKPFS QILADYGNVG GLPKSGMRIG SLNKDLKNAI LMKTEPKGFP NTSRHFVPLP  180
SPTITMNISP KTEPTQESFL SNDNNILSND KSLNLLSQLQ AIKLVTEASN YKQNYESSLP  240
SFYPEATFSS SSSSSSSCSS GAQEMSPLAF NWNDFILEDA FPPNEAQEQQ NNMAEFISSQ  300
NLIIPDSQIQ SEGATNMDNN TSISSNGAIS ETCESSFVEA LLARENEMLL EFPDLMAEAF  360
Y

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28470.1	8e-72	MYB family protein