PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON93506.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 391aa MW: 43592.4 Da PI: 9.6481

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON93506.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.7	4.6e-17	4	53	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW +eEd ll +vkq+G+++W++I+++mg + R +k+c +rw +yl PON93506.1 4 RQRWQPEEDALLRAYVKQYGPRDWSLISQRMGkpLQRDPKSCLERWKNYL 53 89**********************************************97 PP
2	Myb_DNA-binding	35.3	2.7e-11	59	103	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ T+eE+ l + + +++G++ Wk+Ia++++ gRt+k + +w + PON93506.1 59 KGSLTPEEQSLVISLQAKYGNK-WKKIAAEVP-GRTAKRLGKWWEVF 103 6788****************.*****.***999999766 PP

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence
MKERQRWQPE EDALLRAYVK QYGPRDWSLI SQRMGKPLQR DPKSCLERWK NYLKPGLKKG 60 SLTPEEQSLV ISLQAKYGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQLKQ LHKSNKHSHH 120 PQSQALHASA TSSIVSHQSH PYPDGNIPVT VAGSPENAAH GPYDHILETF AEKYVQPKLY 180 GGGGAFVPAM VVADPDPVLS LGSVNSAAPA AVIPPWMNPS SAAAVATSSL SSCTSSTPSP 240 SVSLSLSPSE PVLDPELSRF VSVQQLGGLV QCCKELEEGR LSWQQHKKEA TWRLNRLEQQ 300 LESEKARKRR EKMEETEAKI RSLREEEMAS LSRIESEYRD QLSALQREAE SKEAKLAEAW 360 CSRHVRLAKL VEQIGVHGAS SHGFTTSTTP N

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence

MKERQRWQPE EDALLRAYVK QYGPRDWSLI SQRMGKPLQR DPKSCLERWK NYLKPGLKKG  60
SLTPEEQSLV ISLQAKYGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQLKQ LHKSNKHSHH  120
PQSQALHASA TSSIVSHQSH PYPDGNIPVT VAGSPENAAH GPYDHILETF AEKYVQPKLY  180
GGGGAFVPAM VVADPDPVLS LGSVNSAAPA AVIPPWMNPS SAAAVATSSL SSCTSSTPSP  240
SVSLSLSPSE PVLDPELSRF VSVQQLGGLV QCCKELEEGR LSWQQHKKEA TWRLNRLEQQ  300
LESEKARKRR EKMEETEAKI RSLREEEMAS LSRIESEYRD QLSALQREAE SKEAKLAEAW  360
CSRHVRLAKL VEQIGVHGAS SHGFTTSTTP N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	307	312	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37630.1	1e-61	MYB family protein