PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON93559.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 463aa MW: 50270.8 Da PI: 5.52

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON93559.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.5	2.7e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTteEd++lv +++q G g W+t +++ g+ R++k+c++rw +yl PON93559.1 14 KGSWTTEEDQKLVAYITQNGEGGWRTLPQKAGLLRCGKSCRLRWTNYL 61 799***************************99**********97 PP
2	Myb_DNA-binding	47.2	5e-15	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++ eE+e ++ ++ G++ W+tIa+ ++ +Rt++++k++w++ PON93559.1 67 RGDFSHEEEETIITLHSVIGNK-WSTIAKQLP-RRTDNEIKNHWNT 110 899*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence
MGRAPCCNVQ GLKKGSWTTE EDQKLVAYIT QNGEGGWRTL PQKAGLLRCG KSCRLRWTNY 60 LRPGIKRGDF SHEEEETIIT LHSVIGNKWS TIAKQLPRRT DNEIKNHWNT RLKRLVAEKG 120 IDHFLTSTDT ESAVAKHDIG NNAETEESPE NKLKVIESKG SVSTSCHLLN EVASKFKAYG 180 TLATLIAQQI EKSKSTEEGS SVSSPTTTSA NLLNKVATNL NSPRSNSPGS IKAIFSKSLD 240 GSTTSGSGAN SVSEFVAIIG KSSDVGSPRS ENSVQVSTPV SSSARLLNKM AAKFALMNRL 300 QAMLGDKNQP SVFGNSIDNC TRSGSDGGSS LKTESQTSEP SLFEDSKPDF FHFDGVLGTF 360 RGETCNQLDL AIELDHHDQA LPVKVTDDQS EKVKLKDGTF DKESGSFSNG IDLDEQVSVF 420 TNASSTSYDG SSPVEMIVSD LEAANNWRDC IYFDEFLDAA ILD

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence

MGRAPCCNVQ GLKKGSWTTE EDQKLVAYIT QNGEGGWRTL PQKAGLLRCG KSCRLRWTNY  60
LRPGIKRGDF SHEEEETIIT LHSVIGNKWS TIAKQLPRRT DNEIKNHWNT RLKRLVAEKG  120
IDHFLTSTDT ESAVAKHDIG NNAETEESPE NKLKVIESKG SVSTSCHLLN EVASKFKAYG  180
TLATLIAQQI EKSKSTEEGS SVSSPTTTSA NLLNKVATNL NSPRSNSPGS IKAIFSKSLD  240
GSTTSGSGAN SVSEFVAIIG KSSDVGSPRS ENSVQVSTPV SSSARLLNKM AAKFALMNRL  300
QAMLGDKNQP SVFGNSIDNC TRSGSDGGSS LKTESQTSEP SLFEDSKPDF FHFDGVLGTF  360
RGETCNQLDL AIELDHHDQA LPVKVTDDQS EKVKLKDGTF DKESGSFSNG IDLDEQVSVF  420
TNASSTSYDG SSPVEMIVSD LEAANNWRDC IYFDEFLDAA ILD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74080.1	3e-66	MYB family protein