PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON93561.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 430aa MW: 47023.3 Da PI: 7.0162

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON93561.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.5	2.3e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++q+G g W+ +++ g+ R++k+c++rw +yl PON93561.1 14 KGAWTPEEDQKLLSYIQQHGEGGWRFLPQKAGLMRCGKSCRLRWANYL 61 79********************************************97 PP
2	Myb_DNA-binding	53.1	7.2e-17	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +++eE++ + ++++ lG++ W+tIa+ ++ +Rt++++k++w++ PON93561.1 67 RGEFSPEEEQTIMKLHAVLGNR-WSTIAKNLP-RRTDNEIKNHWNT 110 899*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence
MGRVPCCNVL GLRKGAWTPE EDQKLLSYIQ QHGEGGWRFL PQKAGLMRCG KSCRLRWANY 60 LRPDIKRGEF SPEEEQTIMK LHAVLGNRWS TIAKNLPRRT DNEIKNHWNT RLKKRLIEMG 120 KYHDHDHPNE SRPCSTTTTT QLVSNPIDQP KAQRSTNNSP TTTTSAHLLN EIAASTKLKL 180 SNRLASLLAR HGGGGGGGDG DKKVAVSNSA SVLNKVATTY LKPKSHVILN DAVKEVLSKS 240 SQACSEDIDH GNENVIANSS NNTDNSSCSI SISALEIGNN NSSDMGSPSP KSKNGQESRY 300 VHSATSPRAG VLNGMASKLA LVKRCRSTLL SSTDWGASSH VSSSEFVDES RDAAGSAVLM 360 PVSPSSDERF LFQDMGFDPQ ELFFEGIVSA TDEFDTNTFS VVGDDHEHDQ DDDQMLMRSL 420 CSNFGDELAN

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence

MGRVPCCNVL GLRKGAWTPE EDQKLLSYIQ QHGEGGWRFL PQKAGLMRCG KSCRLRWANY  60
LRPDIKRGEF SPEEEQTIMK LHAVLGNRWS TIAKNLPRRT DNEIKNHWNT RLKKRLIEMG  120
KYHDHDHPNE SRPCSTTTTT QLVSNPIDQP KAQRSTNNSP TTTTSAHLLN EIAASTKLKL  180
SNRLASLLAR HGGGGGGGDG DKKVAVSNSA SVLNKVATTY LKPKSHVILN DAVKEVLSKS  240
SQACSEDIDH GNENVIANSS NNTDNSSCSI SISALEIGNN NSSDMGSPSP KSKNGQESRY  300
VHSATSPRAG VLNGMASKLA LVKRCRSTLL SSTDWGASSH VSSSEFVDES RDAAGSAVLM  360
PVSPSSDERF LFQDMGFDPQ ELFFEGIVSA TDEFDTNTFS VVGDDHEHDQ DDDQMLMRSL  420
CSNFGDELAN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	3e-67	MYB family protein