PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON93598.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 379aa MW: 42081.5 Da PI: 6.7302

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON93598.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.1	1.8e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W++++ g+ R+ k+c++rw +yl PON93598.1 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	48.1	2.7e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l PON93598.1 67 RGNFTDHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence
MGRPPCCDKV GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLLRCS KSCRLRWTNY 60 LRPGIKRGNF TDHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLKKLQ 120 TGHDGHSSPD EFSASNNSHQ ISKGQWERRL QTDIHMAKQA LCEALSLDKP IDHNQDHDHN 180 LCESKPSIIS NITTTFQTST HDHATTTKSH QPSSPYASNA ENIARLLENW MKGTPKSGQT 240 SSEPARDALH NPVLYPVKGT STTTYSSSSE GAQSGTTTPD YHNNNNNQAT NTFHEYSLFS 300 FNSSAASESV VSADETTTAA NLTPETASTV FQDESKPHNN MMEAQAPLTL LEKWLLDDGA 360 AQGHEDLINM SLADSSALF

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence

MGRPPCCDKV GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TDHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLKKLQ  120
TGHDGHSSPD EFSASNNSHQ ISKGQWERRL QTDIHMAKQA LCEALSLDKP IDHNQDHDHN  180
LCESKPSIIS NITTTFQTST HDHATTTKSH QPSSPYASNA ENIARLLENW MKGTPKSGQT  240
SSEPARDALH NPVLYPVKGT STTTYSSSSE GAQSGTTTPD YHNNNNNQAT NTFHEYSLFS  300
FNSSAASESV VSADETTTAA NLTPETASTV FQDESKPHNN MMEAQAPLTL LEKWLLDDGA  360
AQGHEDLINM SLADSSALF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62470.2	1e-108	MYB family protein