PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON93709.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MIKC_MADS

Protein Properties

Length: 251aa MW: 28668.8 Da PI: 9.7323

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON93709.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	90.9	6.6e-29	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+ELS+LCdaev +iifsstgkly+y+s PON93709.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIIFSSTGKLYDYCS 59 8***********************************************96 PP
2	K-box	87.8	2.2e-29	81	170	9	98
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + +++ + +q+e++ L+++++ Lq+ +R+l+Ge+L+ Ls+k+Lq+Le+qLe slk +R+kK+++l+++i+el +k + +++en +L kk PON93709.1 81 NPASEVKFWQREATTLRQQLQYLQECHRQLMGEELSGLSVKDLQNLENQLEMSLKGVRTKKDQILTDEIKELNRKGNLIHQENIELYKKA 170 4678899*******************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELSILCD AEVGLIIFSS TGKLYDYCSS 60 SMKAVIERYN KVKEEHHQLL NPASEVKFWQ REATTLRQQL QYLQECHRQL MGEELSGLSV 120 KDLQNLENQL EMSLKGVRTK KDQILTDEIK ELNRKGNLIH QENIELYKKA DLIQKENVEL 180 QRKAYGASDA NEASRSTSLG YTISNGYDAQ TPIHLQLSQP QPQPQPQPEP QSQPQKIKTS 240 PKAMILGLQL H

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14210.1	3e-98	MIKC_MADS family protein