PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON94328.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family GRAS
Protein Properties Length: 541aa    MW: 60481.6 Da    PI: 4.4392
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON94328.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS141.11.1e-431665383374
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 +lL ++ ea+++g+ el + +L  +se +sp g++++Rla+ + +   ++ ++           +++s    +++ aa+k+fs++ P++kf+h+taN+a
  PON94328.1 166 HLLKAIGEAMEKGQRELEEVILRCISEKVSPLGKSLERLAFNLCQQVDTQCVD---------YLKQES---LKNSEAAFKAFSQILPYVKFAHFTANSA 252
                 7899999**********************************999988888888.........233333...567778999******************* PP

        GRAS 102 Ileavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvl.vakrledlele 192
                 Ilea+  + e+vHi+Dfd+++GlQW  ++ a a R++    l++T +   e++       k +  et+++L + A+++g++++ + + +++ +++++  
  PON94328.1 253 ILEATPDDiETVHIVDFDMGEGLQWSEMIAAAAMRKKA---LKLTSIRWDEEKetdsdpLKWSFGETRRQLLDHARSFGLKLKVEEMgIEDLVSEVKKA 348
                 *****9999**************************765...******987766676655566778********************98444455555555 PP

        GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPk...........vvvvveqe.adh..nsesFlerflealeyysalfdsleaklpr 277
                 + r   +E la n+++ + ++   sv ++    e+L++ k+l +            ++v+++ + ++   n +sF + f   l +y al++s+e+++p 
  PON94328.1 349 KKRGGGREFLAFNCMVGIPHMR--SVRSRRLVMEFLEVAKDLLAAnsancrtsrrgIIVLADGDpCEKlkNCSSFSHFFDGHLVHYQALLESMESTFPD 445
                 555555**************97..6777777788999888874322222334444499****99866558999************************98 PP

        GRAS 278 es.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.eesgslvlgWkdrpLvsvSaWr 374
                     +r+++E  ++++ i+++   ++ e  e +e +    +  + +GF+  +ls++   +ak ++ + +  + r+e ++ +++ l W++ pLv vSaW+
  PON94328.1 446 RLaGARMTMECLFVAPYISSLAWSQKWE--EIKEGF----HLKTGFGFEGWSLSKESIVEAKIMVGEDSCYEVRIEgQNGNEAALEWRGVPLVRVSAWT 538
                 766*****************99999888..555555....345669*********************99777999955567788**************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    
MMQPELFEPS WPFYDVIGST GNQSEYCSLS SMDSQVGGCE FSSLFTTIDC QSEISSNPFS  60
SAISGESVQF AASYNTLQVM SMMEDLPMDL EVFEPELSGE FEAIYGCLEE SVGSFPSQKF  120
SVDESDLWSP SSSTKSEASM DVTSVQPILS LPGVDMEIDN ELSVFHLLKA IGEAMEKGQR  180
ELEEVILRCI SEKVSPLGKS LERLAFNLCQ QVDTQCVDYL KQESLKNSEA AFKAFSQILP  240
YVKFAHFTAN SAILEATPDD IETVHIVDFD MGEGLQWSEM IAAAAMRKKA LKLTSIRWDE  300
EKETDSDPLK WSFGETRRQL LDHARSFGLK LKVEEMGIED LVSEVKKAKK RGGGREFLAF  360
NCMVGIPHMR SVRSRRLVME FLEVAKDLLA ANSANCRTSR RGIIVLADGD PCEKLKNCSS  420
FSHFFDGHLV HYQALLESME STFPDRLAGA RMTMECLFVA PYISSLAWSQ KWEEIKEGFH  480
LKTGFGFEGW SLSKESIVEA KIMVGEDSCY EVRIEGQNGN EAALEWRGVP LVRVSAWTSQ  540
I
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.15e-17GRAS family protein