PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON94499.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family LBD
Protein Properties Length: 261aa    MW: 28045.7 Da    PI: 8.1674
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON94499.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26083.82.5e-2641081100
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C++lrr+C ++C ++p++     p++q++++ +++k++G++ +++l++a p + r+++++sl+ eA+ r+ +Pv G++g++++++++l+++++e+
  PON94499.1   4 SCNGCRILRRGCGQSCSIRPCLewiksPQSQSNATLFLAKFYGRAGLINLINAGPFHLRPEIFKSLLHEACGRIVNPVCGSAGLVSSGSWHLCEAAVEA 102
                 6*************************************************************************************************9 PP

      DUF260  95 allkee 100
                 +l++e+
  PON94499.1 103 VLRGEP 108
                 988765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    
MRLSCNGCRI LRRGCGQSCS IRPCLEWIKS PQSQSNATLF LAKFYGRAGL INLINAGPFH  60
LRPEIFKSLL HEACGRIVNP VCGSAGLVSS GSWHLCEAAV EAVLRGEPIT PVSDELAASR  120
VSGTVSSHGQ LRACDIRHVA KGESSAGCDR LIRKVQSRSR FKRSGNKRKN KVDFESETEF  180
GTESAQLVLS GPPASHDSEG TRRLSRGADS GEVDSGSVEP KPGDRVGPSG LDLELSLGFA  240
MWNSDKIDRC DDATCPVDIG Y
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-66LBD family protein