PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON94516.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family MYB
Protein Properties Length: 308aa    MW: 34993.6 Da    PI: 6.7931
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON94516.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.11e-182370148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll+++++++G g+W++ a++ g++Rt+k+c++rw++yl
       PON94516.1 23 RGPWTVEEDTLLIHYITRHGEGRWNLLAKRSGLRRTGKSCRLRWLNYL 70
                     89********************************************97 PP
2Myb_DNA-binding53.65.3e-1776119146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE+ l++d++ ++G++ W++Ia++++ gRt++++k++w++
       PON94516.1  76 RGNLTPEEQILILDLHSKWGNR-WSKIAQYLP-GRTDNEIKNYWRT 119
                      7999******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    
MSTNSKSSTN TSSSEDYTNE LRRGPWTVEE DTLLIHYITR HGEGRWNLLA KRSGLRRTGK  60
SCRLRWLNYL KPDVKRGNLT PEEQILILDL HSKWGNRWSK IAQYLPGRTD NEIKNYWRTR  120
VQKQAKHLKI DTESAAFQDI IRRLWMPRLL QKIENASSAA NMSIIQNSSP APLPVDNASQ  180
QYYSSTQVVS GHENLNNMPG LTMNERSSDS ESMNLSQISQ FQEYPSNTFQ PNLVNNVNGY  240
DNTFFGGYSC GTGENNAYDG MDVSNQSTIS EGGPENSVGG CHVAGNNWAD NDFFAGVWNM  300
DELWQYRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.14e-81MYB family protein