PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON94572.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family CO-like
Protein Properties Length: 334aa    MW: 36541.9 Da    PI: 6.4995
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON94572.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.41.4e-08436436
    zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                + C+ +++  ++lfC+ +  +lC +C ++ H  
  PON94572.1  4 KLCDSCKSATATLFCRADAAFLCVTCDSNVHAA 36
                68***************************9954 PP
2zf-B_box27.75.4e-094691342
    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                 ++C+ +e+ +++  C+ +   lC +C   +H+       H++vp+
  PON94572.1 46 VWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSAnplarrHERVPV 91
                689*****************************66899999*99986 PP
3CCT70.44.4e-24273316144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 Rea++lRYkeKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  PON94572.1 273 REARVLRYKEKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 316
                 9*****************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    
MASKLCDSCK SATATLFCRA DAAFLCVTCD SNVHAANKLA SRHARVWVCE VCEQAPAHVT  60
CKADAAALCV TCDRDIHSAN PLARRHERVP VTPVYESVNK SAGTVNFLND RCFSDVDGDA  120
AEVSTEEAEA ASWLLPNPKA IDSPDLNSGQ YVFPDMVPYL DLDYGPLDPK LEAQEQNSSV  180
TDGVVPVHYK GSSQPPMVNE QCYEMDFSGN KHFVYGYNAH CLSQSVSSSS LDVGVVPDGN  240
AMTDISNGYG SKPMSSSGPE SARQAAQIST ADREARVLRY KEKRKNRKFE KTIRYASRKA  300
YAETRPRIKG RFAKRTEVEL EADRISGYGV VPTF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-142CO-like family protein