PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON95076.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family LBD
Protein Properties Length: 225aa    MW: 24466.5 Da    PI: 7.962
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON95076.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.84.4e-39131131100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkCa+dC++apyf++eq p++fa++hk+FGasnv+kll ++p  +r +a+ +++yeA+ar+rdPvyG+v++i++lqqq+++l+a+l ++k
  PON95076.1  13 PCGACKFLRRKCAADCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHVPVPDRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLIQAK 111
                 7*************************99*******************************************************************9998 PP

      DUF260  99 ee 100
                 ++
  PON95076.1 112 AQ 113
                 87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MASAAGTGST GSPCGACKFL RRKCAADCIF APYFCSEQGP ARFAAIHKVF GASNVSKLLL  60
HVPVPDRCEA VVTIAYEAQA RIRDPVYGCV AHIFALQQQV ACLQAQLIQA KAQLAQNFID  120
HSRSVEHNNQ WVGGFNNVNN GSSGANLSNL YANNNYMNYP ISPQSSLDSV DQNGSDLIMN  180
AHHHQEIQSG RPNSEDYLVQ ACSRKRPNNG DLGELQALAL RMMRN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.13e-56LBD family protein