PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON95078.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family LBD
Protein Properties Length: 236aa    MW: 26052 Da    PI: 6.7028
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON95078.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.45.9e-3971071100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC+++Cv+apyf++eq + +fa++hk+FGasnv+kll++lp ++r+ a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +lka+la++k
  PON95078.1   7 PCGACKFLRRKCVRGCVFAPYFCHEQgATHFAAIHKVFGASNVSKLLAHLPVSDRPGAAITISYEAQARLKDPIYGCVSHIFALQQQVINLKAQLASIK 105
                 7*************************89********************************************************************999 PP

      DUF260  99 ee 100
                 e+
  PON95078.1 106 EQ 107
                 87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MTGSGSPCGA CKFLRRKCVR GCVFAPYFCH EQGATHFAAI HKVFGASNVS KLLAHLPVSD  60
RPGAAITISY EAQARLKDPI YGCVSHIFAL QQQVINLKAQ LASIKEQAAH SFGANGSANE  120
NPNEKYLKDV HNWFQSENSN NMMPQISPNM TSDASYTLPY FENKAPLASN SGGSSCENSM  180
FGEENNNELY NNGRFDEAFQ FMSSLDSLQT VNRQVGFQDY YSDDLQSVPF SYARHS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.12e-66LBD family protein