PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON95376.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family M-type_MADS
Protein Properties Length: 411aa    MW: 46210.3 Da    PI: 6.8713
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON95376.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.21.3e-151647839
                HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
      SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevavii 39
                 r+ tf kR+ g++KKA+ELS+LCd++v+++i
  PON95376.1 16 ARKRTFQKRKIGLIKKAYELSTLCDVKVCLVI 47
                5888**************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    
MGRGKLPLKL MPKEQARKRT FQKRKIGLIK KAYELSTLCD VKVCLVINDV NNNNNNQSGD  60
QVVAPSSSSS SSIITWPKER REVAAIIDAY EAAMANNPPS KRLQTLSDFF AERTKKVMAE  120
TQKLHDQTNH NEIAELSENQ VFELHSHLNH RIQQVEEQIM RRRSTTYYYN NNNNQFAIQD  180
IPRMNMQPSL DYYSSSHHHE AVATPQMYGH FPYYANTPQP WNIDQPSSSN NPFPVASQTT  240
SLDLNHHPYK GSFNMLLNSH DYAGNSSTST NTYDDHARHN GSIQCYSGSS GAPLEGAAGD  300
HFAMRYGDVF NGPPLLESGM MQQSDQNGMM LISNNNPMSL ALQQPSTYHV NQPLLPLLAG  360
TSDPEWLYCP TIEPVSRQSR PAEAMPSSSS HGGQMYPSSQ GDVNYYYPQQ Q
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77950.21e-11MIKC_MADS family protein