PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON95748.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

SBP

Protein Properties

Length: 410aa MW: 44934.8 Da PI: 7.8004

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON95748.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	133	9.9e-42	95	171	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v++C+adls++++yhrrhkvCe hsk+p+v++ g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+ PON95748.1 95 CLVDDCNADLSNCRDYHRRHKVCELHSKTPQVTIGGEKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 171 **************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence
MDWNSKAPSW DFTELEQESF FNLGTVNGSN NSYGNDHKTI REDFSVDLKL GQVGNSGIDL 60 VDTWKEPRLP KHASSPSGSS KRSRGSYNGS QAVSCLVDDC NADLSNCRDY HRRHKVCELH 120 SKTPQVTIGG EKQRFCQQCS RFHSLEEFDE GKRSCRKRLD GHNRRRRKPQ PEPFTRYGSL 180 LSNYTSTQML PFSSPHVYPS TTIVNPNWGG VVVKTEADSG LHNHHQQLPF LDKQNMFLGS 240 TSPGTGPPSY KAAGSNKTSF PVLHGHSPTI NGQTTTPEVS VCYPPLRAFP SLSQTSEAPR 300 SKVFYDRLLT TTTTTTTTPQ VQNSDCALSL LSSPQAQTSE IGLGHNIMSQ ISSSVPLLGH 360 PTLQANGLEP IMSSVLVTNG SGTADVHCPG MFNMGSDGNE AHQTLPSHWG

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence

MDWNSKAPSW DFTELEQESF FNLGTVNGSN NSYGNDHKTI REDFSVDLKL GQVGNSGIDL  60
VDTWKEPRLP KHASSPSGSS KRSRGSYNGS QAVSCLVDDC NADLSNCRDY HRRHKVCELH  120
SKTPQVTIGG EKQRFCQQCS RFHSLEEFDE GKRSCRKRLD GHNRRRRKPQ PEPFTRYGSL  180
LSNYTSTQML PFSSPHVYPS TTIVNPNWGG VVVKTEADSG LHNHHQQLPF LDKQNMFLGS  240
TSPGTGPPSY KAAGSNKTSF PVLHGHSPTI NGQTTTPEVS VCYPPLRAFP SLSQTSEAPR  300
SKVFYDRLLT TTTTTTTTPQ VQNSDCALSL LSSPQAQTSE IGLGHNIMSQ ISSSVPLLGH  360
PTLQANGLEP IMSSVLVTNG SGTADVHCPG MFNMGSDGNE AHQTLPSHWG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	152	169	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	2e-64	SBP family protein