PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON95759.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MIKC_MADS

Protein Properties

Length: 184aa MW: 21546.9 Da PI: 10.4348

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON95759.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	92.5	2.1e-29	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELS+LCdaeva+iifs++gkly y+s PON95759.1 9 KRIENPTSRQVTFSKRRNGLLKKAFELSILCDAEVALIIFSPSGKLYQYAS 59 79***********************************************86 PP
2	K-box	76.6	6.7e-26	83	172	10	99
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +++ e +++e++ Lk+ +enL+ ++R+l GedL+ L +keL+qLe+qL+ +++++R kK +++ e+i++l+ + ++lqeen++L+kk++ PON95759.1 83 RTRTIEFWKTEIEELKRSTENLEGNLRNLAGEDLSMLGMKELKQLERQLKIGVERVRCKKRRIISEHINYLKIRRRALQEENTRLQKKVK 172 456789*********************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence
MGRGKVELKR IENPTSRQVT FSKRRNGLLK KAFELSILCD AEVALIIFSP SGKLYQYASH 60 DMDRSIVRYR SEMGLPGSAD NERTRTIEFW KTEIEELKRS TENLEGNLRN LAGEDLSMLG 120 MKELKQLERQ LKIGVERVRC KKRRIISEHI NYLKIRRRAL QEENTRLQKK VKLLEQQDDT 180 NPTL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	172	KKRRIISEHINYLKIRRRALQEENTRLQKKVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57230.1	3e-52	MIKC_MADS family protein