PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON95774.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

NF-YC

Protein Properties

Length: 239aa MW: 25848 Da PI: 5.0067

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON95774.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	179.3	3.4e-56	53	157	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdflvdiv PON95774.1 53 QLQMFWSYQrheIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIV 151 89***999999********************************************************************************** PP NF-YC 97 prdelk 102 prde+k PON95774.1 152 PRDEIK 157 *975 PP

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence
MDGTTANNNN NSSNPSGVTA QLPQTSPYPP AGAGVPAGAP APFHHLLQQQ QQQLQMFWSY 60 QRHEIEQVND FKNHQLPLAR IKKIMKADED VRMISAEAPI LFAKACELFI LELTIRSWLH 120 AEENKRRTLQ KNDIAAAITR TDIFDFLVDI VPRDEIKDEA ALGGMVGATA SGVPYYYPPM 180 GQPAGAPGGM MIGRPAVDPT GVYVQPPSQA WQSVWQTTAD DGSYGSGGSS GQGNLDGQS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	126	132	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	9e-88	NF-YC family protein