PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON95930.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

CO-like

Protein Properties

Length: 501aa MW: 55531.8 Da PI: 6.8555

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON95930.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	29.5	1.5e-09	22	65	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+++ +k+++++C ++ +lC+ C + H+ H++v PON95930.1 22 ARACDNCVKKRARWYCAADDAFLCQACDRSVHSAnslarrHERV 65 578*****************************657788888876 PP
2	CCT	67.7	3.1e-23	443	486	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a PON95930.1 443 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 486 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 501 aa Download sequence
MNTSMNYNNK KASNDVVGGK TARACDNCVK KRARWYCAAD DAFLCQACDR SVHSANSLAR 60 RHERVRLKTA SSSRSPHPLR LKPTSHESPS PTWHQGFTRK ARTPRHGNHG AIRGLRFNKP 120 KGRSSTSGST SSGKAPNPFS LVPEFGGDET SQSHDENEEQ LLYRVPIYDP FVAQLCSSVP 180 ELSKTTSFGA NDNNHNGTSP DEENNSSNDN ENLHGFLLPA DEMDDLAEFA ADVESLLGRG 240 LENDECFGME GLGFVDCKDG REKTTGSESC LGEGRVVKVE EDEEGEGEGE GMGSGGLADM 300 MRETFELNFD DYDESPPSCG EEEVEDEKVG LKEMENDKGN DLNDVVKKSS KAMMMTTMKM 360 KKKKKILLRL DYEAVSTAWA SQGGSPWTTG DRPDFDPDAC LPDCMSTCNA AQLHQNHHHH 420 HYMDMGVGVG GLMNAAILGD GGREARVSRY REKRRTRLFS KKIRYEVRKL NAEKRPRMKG 480 RFVKRASFMA AALPTTFPKH K

Sequence ? help Back to Top

Protein Sequence Length: 501 aa Download sequence

MNTSMNYNNK KASNDVVGGK TARACDNCVK KRARWYCAAD DAFLCQACDR SVHSANSLAR  60
RHERVRLKTA SSSRSPHPLR LKPTSHESPS PTWHQGFTRK ARTPRHGNHG AIRGLRFNKP  120
KGRSSTSGST SSGKAPNPFS LVPEFGGDET SQSHDENEEQ LLYRVPIYDP FVAQLCSSVP  180
ELSKTTSFGA NDNNHNGTSP DEENNSSNDN ENLHGFLLPA DEMDDLAEFA ADVESLLGRG  240
LENDECFGME GLGFVDCKDG REKTTGSESC LGEGRVVKVE EDEEGEGEGE GMGSGGLADM  300
MRETFELNFD DYDESPPSCG EEEVEDEKVG LKEMENDKGN DLNDVVKKSS KAMMMTTMKM  360
KKKKKILLRL DYEAVSTAWA SQGGSPWTTG DRPDFDPDAC LPDCMSTCNA AQLHQNHHHH  420
HYMDMGVGVG GLMNAAILGD GGREARVSRY REKRRTRLFS KKIRYEVRKL NAEKRPRMKG  480
RFVKRASFMA AALPTTFPKH K

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	454	470	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	9e-47	CO-like family protein