PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON95932.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family LBD
Protein Properties Length: 244aa    MW: 26642.3 Da    PI: 7.9577
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON95932.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.97.6e-2941081100
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C++dC+++p++     p++q++++ +++k++G++ +l+l++a p+  r+++++sl+yeA+ r+ +P++G+vg+++++++  +q+++e+
  PON95932.1   4 SCNGCRVLRKGCSDDCAIRPCLqwiksPDSQAQATLFLAKFYGRTGLLNLINAGPRYLRPAVFKSLLYEACGRIVNPINGSVGLLWTGEWAKCQAAVEA 102
                 6*************************************************************************************************9 PP

      DUF260  95 allkee 100
                 +l++++
  PON95932.1 103 VLAGAP 108
                 998765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MRTSCNGCRV LRKGCSDDCA IRPCLQWIKS PDSQAQATLF LAKFYGRTGL LNLINAGPRY  60
LRPAVFKSLL YEACGRIVNP INGSVGLLWT GEWAKCQAAV EAVLAGAPIK VESDEHAPHS  120
KLPIKSSCVD IRHVTKDDVV PNSDPSHHRQ LRTRNRFKRT AAGHKTLLCG SDMGSLTQFL  180
NPDHEYWWPS LLGNGSSTSA GEDLESMFSV ESVEASLAQQ AKPEPSPADD TRGEVRLELT  240
LGLA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.11e-69LBD family protein