PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON96055.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 351aa MW: 39940.2 Da PI: 6.4068

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON96055.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.2	6.6e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed++l +++k +G g W++ +++ g++R++k+c++rw++yl PON96055.1 14 RGAWTAMEDKILTEYIKIHGEGKWRSLPKRAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	51.3	2.7e-16	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T +E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ PON96055.1 67 RGNITRDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110 7899****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MGRSPCCSKE GLNRGAWTAM EDKILTEYIK IHGEGKWRSL PKRAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI TRDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NIGKKIQAHS 120 LKSNHTTSRK PSSNRPKFQE LEPKPKTTHS GAQVQQPSYK IHNIPTSSSR VVRTKATRCT 180 KVVLLPQEPQ NILDHGKEIN GGGSTTTDDH DHDNDHQYYN TSEPPVDEVP SAVDYDHDQL 240 VNINCDHHQT FDDVPDKSTY SSSQFMNVDF ETNDHDDFLS QFLNIDFGFN DDVAEKIVSS 300 SSSQGFSFSK SDKENETHLF SHDMLFGLDL ESATASLIDQ AADDDIDWLQ E

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MGRSPCCSKE GLNRGAWTAM EDKILTEYIK IHGEGKWRSL PKRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI TRDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NIGKKIQAHS  120
LKSNHTTSRK PSSNRPKFQE LEPKPKTTHS GAQVQQPSYK IHNIPTSSSR VVRTKATRCT  180
KVVLLPQEPQ NILDHGKEIN GGGSTTTDDH DHDNDHQYYN TSEPPVDEVP SAVDYDHDQL  240
VNINCDHHQT FDDVPDKSTY SSSQFMNVDF ETNDHDDFLS QFLNIDFGFN DDVAEKIVSS  300
SSSQGFSFSK SDKENETHLF SHDMLFGLDL ESATASLIDQ AADDDIDWLQ E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	2e-63	MYB family protein