PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON96153.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

LBD

Protein Properties

Length: 314aa MW: 34774.6 Da PI: 6.271

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON96153.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.2	1.6e-39	33	133	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 aCaaCk++rrkCa+dCvlapyfp++ +++f n+hklFG+sn++k++++l ++ r++am++++++++ara dPv G++++i++lq+q++ +kael+l+ PON96153.1 33 ACAACKYQRRKCAPDCVLAPYFPHDTQRQFLNAHKLFGVSNITKIIRKLdSPAARDHAMRTIIFQSDARAADPVGGCYRIIQDLQRQIDFAKAELDLVL 131 7**********************************************55666***************************************9886 PP DUF260 99 ee 100 ++ PON96153.1 132 QH 133 65 PP

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence
MSLIPHTKTK TTTTTPSSSS SSSSSKGSGN GQACAACKYQ RRKCAPDCVL APYFPHDTQR 60 QFLNAHKLFG VSNITKIIRK LDSPAARDHA MRTIIFQSDA RAADPVGGCY RIIQDLQRQI 120 DFAKAELDLV LQHLELCRAA AAAAAVPPPQ STSSHDDHFY NDTMHSELHH HQHDQFLHPQ 180 VIHGELEASR YVVVDQDRHE HLQDDVSSWV VQDSVMDVKP VTAAIGGVVG GDQDVHVGKP 240 LLEVSSDVKI INGVATNFEP HHHRDDEAML RTVGHNVVLK QENQDDHYSI QRNDEDDEDL 300 RDAATLFTLT NCTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	2e-50	LBD family protein