PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON96177.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 391aa MW: 43328.5 Da PI: 6.8706

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON96177.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.9	2e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l++++ +G g+W+++++ g+ R++k+c++rw +yl PON96177.1 14 RGLWSPEEDEKLINYISTYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP
2	Myb_DNA-binding	49.8	8.1e-16	67	109	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+++++E l++++++ lG++ W+ Ia++++ gRt++++k++w+ PON96177.1 67 RGSFSPQEAALIIELHTILGNR-WAQIAKHLP-GRTDNEVKNFWN 109 899*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence
MGHHSCCNKQ KVKRGLWSPE EDEKLINYIS TYGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGSF SPQEAALIIE LHTILGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLLSHH 120 DHHHIIPPAL SAAFSDHFHF PITTTTSYSD IHDHEQEASF FTFTATNPNN NMILTSHHHH 180 HHEQQLYLPA INPTPPAVPV LLAGPQGSFY HSTDNVVHLS SPPNISSSTT LNYDSTLMSF 240 LGYQPPQSSL DQTLSTAVPD IVSSNSSDKQ LIFDQSMILS AYNHENTVLM APTMPKLCDA 300 VDVSNLCSTT TSATPPFSAT SDPQAEVLNT PLLQDSSRVL VSSFQDSYVP ITSQMEYIDA 360 MIMSSLXSPS SCISALSTPL SNGQFVNHLK P

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence

MGHHSCCNKQ KVKRGLWSPE EDEKLINYIS TYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SPQEAALIIE LHTILGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLLSHH  120
DHHHIIPPAL SAAFSDHFHF PITTTTSYSD IHDHEQEASF FTFTATNPNN NMILTSHHHH  180
HHEQQLYLPA INPTPPAVPV LLAGPQGSFY HSTDNVVHLS SPPNISSSTT LNYDSTLMSF  240
LGYQPPQSSL DQTLSTAVPD IVSSNSSDKQ LIFDQSMILS AYNHENTVLM APTMPKLCDA  300
VDVSNLCSTT TSATPPFSAT SDPQAEVLNT PLLQDSSRVL VSSFQDSYVP ITSQMEYIDA  360
MIMSSLXSPS SCISALSTPL SNGQFVNHLK P

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13890.2	5e-77	MYB family protein