PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON96189.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family MYB_related
Protein Properties Length: 277aa    MW: 30736.6 Da    PI: 8.3631
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON96189.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.21.6e-12556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT+eE+e l+ +v+++G+g Wk I +         +R+  ++k++w+++
       PON96189.1  5 KQKWTPEEEEALLAGVAKYGTGKWKNIIKDPDfahtlCNRSNIDLKDKWRNL 56
                     79*************************877777777779***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    
MGNQKQKWTP EEEEALLAGV AKYGTGKWKN IIKDPDFAHT LCNRSNIDLK DKWRNLSVSS  60
GSSKEKSRAH KTKSIVASEN LIIQNSDIAA SIPLNASSCA SMNDPSNCTQ DGKSASPYKE  120
MIFEALSTMK DVNESDVGAI HNFSEKRHGT PLSPNFKRSL SSRSRKLVVQ EKPEKVENGY  180
KIRKEIPMGR NTPSPKQKNI RSQRSLDSRL ITCTESQDDV ADAAFKVAEA ENKSFLAAEA  240
VGEAEQLSRI AEDSECMLQL MNEIYKQCSR GELVHLA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.12e-55MYB_related family protein